Variant report

Variant	rs568656227
Chromosome Location	chr6:80715997-80715998
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv5370	chr6:80715351-80751740	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80713400-80717200	Active TSS	Thymus	Thymus
2	chr6:80713600-80716000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:80713600-80716000	Active TSS	NHLF	lung
4	chr6:80713800-80716600	Active TSS	Fetal Thymus	thymus
5	chr6:80714000-80716000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:80714000-80716000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:80714000-80716800	Active TSS	GM12878-XiMat	blood
8	chr6:80714800-80738800	Weak transcription	Small Intestine	intestine
9	chr6:80715000-80717400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:80715000-80718600	Weak transcription	Fetal Brain Male	brain
11	chr6:80715000-80730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:80715000-80748000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:80715000-80752200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:80715000-80752400	Weak transcription	Placenta	Placenta
15	chr6:80715200-80716000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:80715200-80716000	Active TSS	NH-A	brain
17	chr6:80715200-80718400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:80715200-80718800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:80715200-80721200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:80715200-80726000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:80715200-80727000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:80715200-80730800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:80715200-80734000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:80715200-80734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:80715200-80739200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:80715200-80749600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:80715200-80752000	Weak transcription	Primary B cells from cord blood	blood
28	chr6:80715200-80752200	Weak transcription	Primary T cells from cord blood	blood
29	chr6:80715400-80716000	Enhancers	Fetal Heart	heart
30	chr6:80715400-80717000	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr6:80715400-80718000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:80715400-80721200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:80715400-80721200	Weak transcription	Fetal Kidney	kidney
34	chr6:80715400-80722600	Weak transcription	Fetal Intestine Large	intestine
35	chr6:80715400-80726000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:80715400-80727000	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:80715400-80729400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:80715400-80742200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:80715400-80743200	Weak transcription	Brain Germinal Matrix	brain
40	chr6:80715400-80745400	Weak transcription	Fetal Lung	lung
41	chr6:80715400-80755000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:80715400-80756800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:80715600-80716000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:80715600-80716000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:80715600-80716000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:80715600-80716000	Enhancers	Hela-S3	cervix
47	chr6:80715600-80716000	Enhancers	NHEK	skin
48	chr6:80715600-80716200	Enhancers	HUVEC	blood vessel
49	chr6:80715600-80716400	Weak transcription	Fetal Brain Female	brain
50	chr6:80715600-80716400	Genic enhancers	HSMM	muscle

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