Variant report

Variant	rs568683689
Chromosome Location	chr6:150920158-150920159
allele	-/ATC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:150920140-150920991	GM12878	blood:	n/a	n/a
2	KAP1	chr6:150920064-150920925	HEK293	kidney:	n/a	n/a
3	E2F6	chr6:150920122-150920642	H1-hESC	embryonic stem cell:	n/a	chr6:150920344-150920351 chr6:150920344-150920352 chr6:150920343-150920354 chr6:150920344-150920352 chr6:150920344-150920355 chr6:150920343-150920353
4	ZNF143	chr6:150920093-150920449	GM12878	blood:	n/a	n/a
5	ESRRA	chr6:150920131-150920985	GM12878	blood:	n/a	n/a
6	EP300	chr6:150920124-150920655	GM12878	blood:	n/a	chr6:150920488-150920502

Variant related genes	Relation type
ENSG00000232891	TF binding region
PLEKHG1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3415576	chr6:150920109-150923107	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150901600-150920400	Weak transcription	Right Atrium	heart
2	chr6:150911800-150920800	Weak transcription	Aorta	Aorta
3	chr6:150916400-150920200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:150917200-150920200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:150917400-150920200	Weak transcription	Small Intestine	intestine
6	chr6:150918000-150920200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150918200-150920600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:150918400-150920800	Weak transcription	Psoas Muscle	Psoas
9	chr6:150918600-150920200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:150919200-150920600	Bivalent Enhancer	Fetal Intestine Large	intestine
11	chr6:150919200-150921000	Weak transcription	Spleen	Spleen
12	chr6:150919800-150920200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:150919800-150920200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:150920000-150920200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:150920000-150920200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr6:150920000-150920200	Enhancers	Colonic Mucosa	Colon
17	chr6:150920000-150920200	Enhancers	Fetal Intestine Small	intestine
18	chr6:150920000-150920200	Flanking Active TSS	Fetal Kidney	kidney
19	chr6:150920000-150920200	Enhancers	Gastric	stomach
20	chr6:150920000-150920400	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr6:150920000-150920400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:150920000-150920400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:150920000-150920400	Flanking Active TSS	Liver	Liver
24	chr6:150920000-150920400	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr6:150920000-150920400	Enhancers	Fetal Brain Female	brain
26	chr6:150920000-150920400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr6:150920000-150920400	Flanking Active TSS	Thymus	Thymus
28	chr6:150920000-150920600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:150920000-150920600	Flanking Active TSS	Fetal Thymus	thymus
30	chr6:150920000-150920600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood

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