Variant report

Variant	rs568822888
Chromosome Location	chr15:79243861-79243862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr15:79243736-79244574	PANC-1	pancreas:	n/a	chr15:79244453-79244462
2	PAX5	chr15:79243794-79244087	GM12878	blood:	n/a	n/a
3	RUNX3	chr15:79243735-79244219	GM12878	blood:	n/a	n/a
4	EBF1	chr15:79243741-79244109	GM12878	blood:	n/a	n/a
5	EBF1	chr15:79243855-79244132	GM12878	blood:	n/a	n/a
6	IKZF1	chr15:79243684-79244103	GM12878	blood:	n/a	n/a
7	CTCF	chr15:79243760-79243910	AG04450	lung:	n/a	n/a
8	RUNX3	chr15:79243739-79244268	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79198022..79200286-chr15:79243264..79245188,2	K562	blood:
2	chr15:79242855..79244395-chr15:79271553..79274104,2	MCF-7	breast:
3	chr15:79242274..79244417-chr15:79247042..79249871,2	MCF-7	breast:
4	chr15:79242281..79244797-chr15:79245388..79247150,2	K562	blood:
5	chr15:79238657..79240315-chr15:79242629..79245251,2	K562	blood:
6	chr15:79243049..79243885-chr15:87130991..87131736,2	MCF-7	breast:

No data

Variant related genes	Relation type
CTSH	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79237800-79244200	Weak transcription	Psoas Muscle	Psoas
2	chr15:79238600-79244200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:79238600-79252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:79240800-79245400	Enhancers	Stomach Mucosa	stomach
5	chr15:79241000-79245200	Enhancers	Liver	Liver
6	chr15:79241600-79244000	Enhancers	NHEK	skin
7	chr15:79241600-79244200	Enhancers	Gastric	stomach
8	chr15:79241600-79245000	Enhancers	Pancreas	Pancrea
9	chr15:79241800-79244800	Enhancers	Fetal Intestine Large	intestine
10	chr15:79242000-79245400	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:79242200-79244400	Enhancers	Fetal Kidney	kidney
12	chr15:79242200-79244800	Enhancers	Lung	lung
13	chr15:79242400-79244000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:79242400-79244200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr15:79242400-79244400	Enhancers	Adipose Nuclei	Adipose
16	chr15:79242400-79244800	Enhancers	Left Ventricle	heart
17	chr15:79242600-79244000	Weak transcription	Esophagus	oesophagus
18	chr15:79242600-79245000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr15:79242800-79244000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:79242800-79244200	Weak transcription	Fetal Intestine Small	intestine
21	chr15:79243000-79244600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:79243200-79244200	Enhancers	Fetal Muscle Leg	muscle
23	chr15:79243200-79244600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr15:79243200-79244600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:79243200-79244600	Enhancers	A549	lung
26	chr15:79243200-79244600	Enhancers	GM12878-XiMat	blood
27	chr15:79243200-79244800	Enhancers	HMEC	breast
28	chr15:79243200-79245000	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:79243200-79245000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:79243200-79245400	Enhancers	Hela-S3	cervix
31	chr15:79243400-79244200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:79243400-79244200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr15:79243400-79244400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:79243400-79244600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr15:79243400-79244600	Enhancers	Fetal Lung	lung
36	chr15:79243400-79244800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:79243400-79244800	Enhancers	Ovary	ovary
38	chr15:79243600-79244000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr15:79243600-79244200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr15:79243600-79244200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:79243600-79244200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:79243600-79244400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:79243600-79244400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:79243600-79244400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:79243600-79244400	Enhancers	Small Intestine	intestine
46	chr15:79243600-79244400	Enhancers	HSMM	muscle
47	chr15:79243600-79244400	Enhancers	HUVEC	blood vessel
48	chr15:79243600-79244400	Enhancers	NH-A	brain
49	chr15:79243600-79244400	Enhancers	Osteobl	bone
50	chr15:79243600-79244600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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