Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1991093	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2432690	0.91[EUR][1000 genomes]
rs2656093	0.81[EUR][1000 genomes]
rs2764664	0.86[ASN][1000 genomes]
rs2764666	0.86[ASN][1000 genomes]
rs485723	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs486809	0.80[EUR][1000 genomes]
rs487566	0.88[EUR][1000 genomes]
rs499397	0.86[EUR][1000 genomes]
rs501921	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs508389	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs545582	0.81[ASN][1000 genomes]
rs545671	0.91[EUR][1000 genomes]
rs561531	0.86[ASN][1000 genomes]
rs576038	0.91[EUR][1000 genomes]
rs587046	0.81[EUR][1000 genomes]
rs595513	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs595568	0.81[EUR][1000 genomes]
rs610360	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs611606	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs620214	0.88[EUR][1000 genomes]
rs642526	0.91[EUR][1000 genomes]
rs643382	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs648607	0.86[ASN][1000 genomes]
rs657612	0.85[EUR][1000 genomes]
rs663975	0.81[EUR][1000 genomes]
rs674966	0.86[ASN][1000 genomes]
rs675075	0.81[EUR][1000 genomes]
rs680197	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs706385	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57742200-57755400	Weak transcription	Fetal Brain Male	brain
2	chr1:57747600-57769400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:57748400-57755200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:57751600-57765600	Weak transcription	Fetal Intestine Small	intestine
5	chr1:57751600-57770600	Weak transcription	Fetal Intestine Large	intestine
6	chr1:57753000-57759400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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