Variant report
| Variant | rs56884931 |
|---|---|
| Chromosome Location | chr1:86179147-86179148 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000142871 | Chromatin interaction |
| ENSG00000117174 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs55863151 | 1.00[AMR][1000 genomes] |
| rs56276114 | 0.83[AMR][1000 genomes] |
| rs57768694 | 1.00[AMR][1000 genomes] |
| rs60184734 | 1.00[AMR][1000 genomes] |
| rs61168883 | 0.85[AMR][1000 genomes] |
| rs61328391 | 1.00[AMR][1000 genomes] |
| rs6699712 | 1.00[AMR][1000 genomes] |
| rs72944688 | 1.00[AMR][1000 genomes] |
| rs72944702 | 1.00[AMR][1000 genomes] |
| rs74097059 | 1.00[AMR][1000 genomes] |
| rs74097060 | 1.00[AMR][1000 genomes] |
| rs74097061 | 1.00[AMR][1000 genomes] |
| rs74097066 | 1.00[AMR][1000 genomes] |
| rs74097067 | 1.00[AMR][1000 genomes] |
| rs74097075 | 1.00[AMR][1000 genomes] |
| rs74097079 | 1.00[AMR][1000 genomes] |
| rs74097081 | 1.00[AMR][1000 genomes] |
| rs74097082 | 1.00[AMR][1000 genomes] |
| rs74097084 | 1.00[AMR][1000 genomes] |
| rs74097085 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7530774 | 1.00[AMR][1000 genomes] |
| rs7538740 | 0.85[AMR][1000 genomes] |
| rs7541996 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006994 | chr1:85454304-86327679 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv3391173 | chr1:86005637-86337469 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv817212 | chr1:86127851-86658426 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv871471 | chr1:86143084-86211516 | Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:86174400-86185800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
