Variant report

Variant	rs568997549
Chromosome Location	chr13:95927596-95927597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95927378..95929483-chr13:95944855..95946497,2	K562	blood:
2	chr13:95923828..95925504-chr13:95926180..95928122,2	K562	blood:
3	chr13:95924370..95928427-chr13:95951382..95954630,5	K562	blood:

Variant related genes	Relation type
ENSG00000125257	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv900926	chr13:95927386-95972496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv900927	chr13:95927386-95975185	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
4	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
7	chr13:95920600-95928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:95921600-95927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:95922400-95927600	Weak transcription	Brain Anterior Caudate	brain
10	chr13:95922400-95927800	Weak transcription	NHEK	skin
11	chr13:95922800-95928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:95923800-95941200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr13:95924200-95927600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:95924200-95927600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:95924200-95928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:95924200-95930800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:95924200-95932800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr13:95924400-95927800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr13:95924400-95927800	Weak transcription	Brain Substantia Nigra	brain
20	chr13:95924400-95927800	Weak transcription	NH-A	brain
21	chr13:95924600-95927600	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:95924600-95928000	Weak transcription	Osteobl	bone
23	chr13:95924600-95928400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr13:95924600-95952600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr13:95924800-95928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:95924800-95932200	Weak transcription	HUVEC	blood vessel
27	chr13:95925400-95927600	Genic enhancers	A549	lung
28	chr13:95925400-95929000	Enhancers	Colon Smooth Muscle	Colon
29	chr13:95925600-95928200	Enhancers	Stomach Mucosa	stomach
30	chr13:95925600-95929000	Enhancers	NHLF	lung
31	chr13:95925800-95928600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr13:95925800-95928800	Enhancers	Fetal Stomach	stomach
33	chr13:95925800-95929000	Enhancers	Fetal Lung	lung
34	chr13:95925800-95932200	Weak transcription	Psoas Muscle	Psoas
35	chr13:95926000-95927800	Enhancers	Ovary	ovary
36	chr13:95926200-95927800	Enhancers	Duodenum Mucosa	Duodenum
37	chr13:95926200-95928400	Enhancers	Stomach Smooth Muscle	stomach
38	chr13:95926200-95928600	Enhancers	Fetal Intestine Large	intestine
39	chr13:95926200-95928600	Enhancers	Pancreas	Pancrea
40	chr13:95926200-95929000	Enhancers	Small Intestine	intestine
41	chr13:95926400-95928400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr13:95926400-95928400	Enhancers	Fetal Intestine Small	intestine
43	chr13:95926400-95928400	Enhancers	Fetal Kidney	kidney
44	chr13:95926400-95928600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:95926400-95928600	Enhancers	HepG2	liver
46	chr13:95926600-95952400	Weak transcription	Brain Hippocampus Middle	brain
47	chr13:95926800-95927600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:95926800-95928200	Enhancers	Brain Germinal Matrix	brain
49	chr13:95926800-95931400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr13:95926800-95932800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links