Variant report

Variant	rs569017682
Chromosome Location	chr17:37622830-37622831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr17:37622810-37622999	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:37616532..37619148-chr17:37622175..37626239,3	MCF-7	breast:
2	chr17:37621427..37623786-chr17:37626358..37629657,3	MCF-7	breast:
3	chr17:37618970..37621039-chr17:37622079..37624596,3	MCF-7	breast:

Variant related genes	Relation type
CDK12	TF binding region
ENSG00000167258	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
6	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
7	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
11	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
13	esv3444045	chr17:37622519-37622959	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37619600-37627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:37619800-37627200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:37619800-37649200	Weak transcription	Esophagus	oesophagus
4	chr17:37620200-37627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:37620400-37627400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:37620400-37650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:37620600-37623600	Weak transcription	Fetal Heart	heart
8	chr17:37620600-37625400	Weak transcription	NHDF-Ad	bronchial
9	chr17:37620800-37625200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr17:37620800-37626800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr17:37620800-37627200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr17:37621000-37623400	Weak transcription	Fetal Muscle Leg	muscle
13	chr17:37621000-37623600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:37621000-37623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:37621000-37623600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:37621000-37623600	Weak transcription	Fetal Kidney	kidney
17	chr17:37621000-37626600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr17:37621000-37626800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr17:37621000-37627000	Weak transcription	HSMMtube	muscle
20	chr17:37621000-37627200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr17:37621000-37627200	Weak transcription	Right Ventricle	heart
22	chr17:37621000-37627600	Weak transcription	Colonic Mucosa	Colon
23	chr17:37621200-37623800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:37621200-37624000	Weak transcription	Osteobl	bone
25	chr17:37621200-37624400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr17:37621200-37625200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr17:37621200-37626800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr17:37621200-37626800	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:37621200-37626800	Weak transcription	HMEC	breast
30	chr17:37621200-37627000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:37621200-37627000	Weak transcription	Brain Substantia Nigra	brain
32	chr17:37621200-37627200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr17:37621200-37627200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr17:37621200-37627200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr17:37621200-37627200	Weak transcription	Aorta	Aorta
36	chr17:37621200-37627200	Weak transcription	Gastric	stomach
37	chr17:37621200-37627200	Weak transcription	Psoas Muscle	Psoas
38	chr17:37621400-37623400	Weak transcription	Fetal Intestine Large	intestine
39	chr17:37621400-37626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr17:37621400-37626200	Strong transcription	Fetal Intestine Small	intestine
41	chr17:37621400-37630400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr17:37621600-37626800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr17:37621600-37627200	Weak transcription	Thymus	Thymus
44	chr17:37621800-37624400	Weak transcription	HUVEC	blood vessel
45	chr17:37621800-37626800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:37621800-37626800	Weak transcription	NH-A	brain
47	chr17:37621800-37626800	Weak transcription	NHEK	skin
48	chr17:37621800-37627000	Weak transcription	NHLF	lung
49	chr17:37622000-37623600	Weak transcription	Primary B cells from cord blood	blood
50	chr17:37622000-37623600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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