Variant report
| Variant | rs56918103 |
|---|---|
| Chromosome Location | chr1:225525864-225525865 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10495232 | 1.00[EUR][1000 genomes] |
| rs10495235 | 1.00[EUR][1000 genomes] |
| rs11805350 | 1.00[EUR][1000 genomes] |
| rs12066443 | 1.00[EUR][1000 genomes] |
| rs12069808 | 1.00[EUR][1000 genomes] |
| rs12071270 | 1.00[EUR][1000 genomes] |
| rs12074382 | 1.00[EUR][1000 genomes] |
| rs12080062 | 1.00[EUR][1000 genomes] |
| rs12086473 | 1.00[EUR][1000 genomes] |
| rs1480102 | 1.00[EUR][1000 genomes] |
| rs16844321 | 1.00[EUR][1000 genomes] |
| rs16844324 | 1.00[EUR][1000 genomes] |
| rs16844328 | 1.00[EUR][1000 genomes] |
| rs16844331 | 1.00[EUR][1000 genomes] |
| rs16844347 | 1.00[EUR][1000 genomes] |
| rs16844357 | 1.00[EUR][1000 genomes] |
| rs2153246 | 1.00[EUR][1000 genomes] |
| rs3991375 | 1.00[EUR][1000 genomes] |
| rs4475714 | 1.00[EUR][1000 genomes] |
| rs60727542 | 1.00[EUR][1000 genomes] |
| rs6664529 | 1.00[EUR][1000 genomes] |
| rs6673779 | 1.00[EUR][1000 genomes] |
| rs6675157 | 1.00[EUR][1000 genomes] |
| rs6675162 | 1.00[EUR][1000 genomes] |
| rs6689608 | 1.00[EUR][1000 genomes] |
| rs6693582 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6698942 | 1.00[EUR][1000 genomes] |
| rs6699883 | 1.00[EUR][1000 genomes] |
| rs73136911 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73136918 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7512125 | 1.00[EUR][1000 genomes] |
| rs7519130 | 1.00[EUR][1000 genomes] |
| rs7524227 | 1.00[EUR][1000 genomes] |
| rs7533311 | 1.00[EUR][1000 genomes] |
| rs7535962 | 1.00[EUR][1000 genomes] |
| rs7536912 | 1.00[EUR][1000 genomes] |
| rs7551251 | 1.00[EUR][1000 genomes] |
| rs769297 | 1.00[EUR][1000 genomes] |
| rs9286991 | 1.00[EUR][1000 genomes] |
| rs9660934 | 1.00[EUR][1000 genomes] |
| rs9803691 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv945672 | chr1:225339532-225561349 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv873226 | chr1:225347689-225555602 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1805729 | chr1:225404951-225526778 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757774 | chr1:225404951-225526778 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2759002 | chr1:225404951-225526778 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv428312 | chr1:225404951-225526778 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:225525800-225526600 | Bivalent Enhancer | Dnd41 | blood |
