Variant report

Variant	rs56921348
Chromosome Location	chr14:65814262-65814263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65809666..65811577-chr14:65812664..65815660,3	MCF-7	breast:
2	chr14:65813667..65817419-chr14:65818159..65821659,6	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12436871	1.00[ASN][1000 genomes]
rs2297962	0.85[ASN][1000 genomes]
rs57309452	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57571874	0.81[ASN][1000 genomes]
rs58794139	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59170311	0.85[ASN][1000 genomes]
rs59633486	0.84[AFR][1000 genomes]
rs60824754	0.98[ASN][1000 genomes]
rs7141590	1.00[ASN][1000 genomes]
rs73278048	0.84[AFR][1000 genomes]
rs73278079	0.84[AFR][1000 genomes]
rs73278092	0.84[AFR][1000 genomes]
rs73278096	0.84[AFR][1000 genomes]
rs73278102	0.84[AFR][1000 genomes]
rs73280103	0.84[AFR][1000 genomes]
rs73280111	0.84[AFR][1000 genomes]
rs73282204	0.80[ASN][1000 genomes]
rs73282206	0.80[ASN][1000 genomes]
rs73282208	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65803400-65821000	Weak transcription	Esophagus	oesophagus
2	chr14:65812000-65815000	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:65812000-65822800	Weak transcription	Gastric	stomach
4	chr14:65812800-65814400	Enhancers	Fetal Intestine Small	intestine
5	chr14:65812800-65816600	Enhancers	Fetal Intestine Large	intestine
6	chr14:65813200-65814400	Enhancers	K562	blood
7	chr14:65813200-65815400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:65813200-65815600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:65813200-65816200	Enhancers	Placenta	Placenta
10	chr14:65813200-65816200	Enhancers	Ovary	ovary
11	chr14:65813400-65814800	Enhancers	Primary B cells from peripheral blood	blood
12	chr14:65813400-65814800	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:65813400-65814800	Enhancers	Fetal Lung	lung
14	chr14:65813400-65815000	Enhancers	NHLF	lung
15	chr14:65813600-65815000	Weak transcription	Brain Angular Gyrus	brain
16	chr14:65813600-65815000	Enhancers	Stomach Mucosa	stomach
17	chr14:65813800-65815000	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:65813800-65815000	Enhancers	Spleen	Spleen
19	chr14:65813800-65815200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:65813800-65818000	Weak transcription	GM12878-XiMat	blood
21	chr14:65813800-65821200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65813800-65823600	Weak transcription	Thymus	Thymus
23	chr14:65814000-65814600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:65814000-65814600	Weak transcription	Lung	lung
25	chr14:65814000-65814600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:65814000-65821400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:65814000-65823400	Weak transcription	Small Intestine	intestine
28	chr14:65814000-65824800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:65814200-65814600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:65814200-65814600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:65814200-65815200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr14:65814200-65816800	Weak transcription	Primary B cells from cord blood	blood
33	chr14:65814200-65819600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:65814200-65822200	Weak transcription	Primary T cells from cord blood	blood

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