Variant report

Variant	rs569312855
Chromosome Location	chr4:143438617-143438618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143438526..143441082-chr4:143443050..143445665,2	MCF-7	breast:
2	chr4:143437978..143440231-chr4:143767041..143768729,2	MCF-7	breast:
3	chr4:143438172..143440969-chr4:143448454..143450355,2	K562	blood:
4	chr4:143391320..143397090-chr4:143436268..143441588,7	MCF-7	breast:
5	chr4:143427468..143430250-chr4:143437553..143439341,2	MCF-7	breast:
6	chr4:143436540..143438888-chr4:143456433..143458379,2	MCF-7	breast:
7	chr4:143430690..143432706-chr4:143438410..143440914,2	MCF-7	breast:
8	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143428800-143453000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143434000-143440600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:143436600-143438800	Enhancers	HMEC	breast
4	chr4:143436600-143440000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:143436600-143440000	Enhancers	Dnd41	blood
6	chr4:143437200-143438800	Enhancers	NHEK	skin
7	chr4:143437200-143439000	Enhancers	Fetal Heart	heart
8	chr4:143437600-143438800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:143438200-143440000	Weak transcription	Left Ventricle	heart
10	chr4:143438600-143438800	Enhancers	Aorta	Aorta
11	chr4:143438600-143440000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:143438600-143440400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:143438600-143440600	Weak transcription	HSMM	muscle
14	chr4:143438600-143443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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