Variant report

Variant	rs56932873
Chromosome Location	chr8:110399365-110399366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110388617..110395072-chr8:110396032..110405839,11	K562	blood:
2	chr8:110397526..110401680-chr8:110402055..110405525,5	K562	blood:
3	chr8:110397373..110399828-chr8:110505690..110508375,2	K562	blood:
4	chr8:110391499..110394340-chr8:110396610..110400316,3	K562	blood:
5	chr8:110374002..110377737-chr8:110399223..110401592,3	K562	blood:
6	chr8:110397376..110399556-chr8:110407254..110410081,2	K562	blood:
7	chr8:110399100..110401680-chr8:110403337..110405156,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205038	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16879336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16879553	1.00[AMR][1000 genomes]
rs16879567	1.00[AMR][1000 genomes]
rs16879636	1.00[AMR][1000 genomes]
rs1892762	1.00[AMR][1000 genomes]
rs1979299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1979300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124980	1.00[AMR][1000 genomes]
rs55752435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56238419	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57170073	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57937650	1.00[AMR][1000 genomes]
rs59326650	1.00[AMR][1000 genomes]
rs59478583	1.00[AMR][1000 genomes]
rs59982879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60463599	1.00[AMR][1000 genomes]
rs73700649	1.00[AMR][1000 genomes]
rs73700650	1.00[AMR][1000 genomes]
rs73700652	1.00[AMR][1000 genomes]
rs73700655	1.00[AMR][1000 genomes]
rs73700858	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704006	1.00[AMR][1000 genomes]
rs73704009	1.00[AMR][1000 genomes]
rs73704016	1.00[AMR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv972244	chr8:110389671-110400955	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1845153	chr8:110397738-110421793	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1832336	chr8:110397738-110437384	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110398600-110401400	Weak transcription	K562	blood

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