Variant report

Variant	rs56938392
Chromosome Location	chr11:93713613-93713614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93710125..93711813-chr11:93711990..93713968,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10501813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1113700	0.88[EUR][1000 genomes]
rs11825709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401184	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1518560	0.94[ASN][1000 genomes]
rs1589166	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1607401	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1850656	0.93[ASN][1000 genomes]
rs1894165	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894166	0.94[ASN][1000 genomes]
rs1945786	0.94[ASN][1000 genomes]
rs1945787	0.94[ASN][1000 genomes]
rs2020351	0.94[ASN][1000 genomes]
rs2102857	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2139089	0.94[ASN][1000 genomes]
rs2176563	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2203793	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2213108	0.93[ASN][1000 genomes]
rs2213110	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2399750	0.94[ASN][1000 genomes]
rs2460047	0.88[EUR][1000 genomes]
rs2460049	0.87[ASN][1000 genomes]
rs2460050	0.94[ASN][1000 genomes]
rs2460052	0.92[ASN][1000 genomes]
rs2460053	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460064	0.94[ASN][1000 genomes]
rs2460065	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460069	0.94[ASN][1000 genomes]
rs2460070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2462733	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2462735	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2462756	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2462757	0.92[ASN][1000 genomes]
rs2462758	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2462759	0.94[ASN][1000 genomes]
rs2462760	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2462763	0.94[ASN][1000 genomes]
rs2511380	0.94[ASN][1000 genomes]
rs2511381	0.88[ASN][1000 genomes]
rs2511403	0.92[ASN][1000 genomes]
rs2511411	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57106172	0.96[ASN][1000 genomes]
rs57586533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57953549	0.86[ASN][1000 genomes]
rs59013509	0.88[EUR][1000 genomes]
rs59689949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59793398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60539088	1.00[EUR][1000 genomes]
rs66480929	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66514329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66523751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66538341	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66650995	1.00[EUR][1000 genomes]
rs66918645	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66977226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67001808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67243356	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67412659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67926172	1.00[EUR][1000 genomes]
rs67988338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68019383	0.88[EUR][1000 genomes]
rs72964631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73551180	0.84[ASN][1000 genomes]
rs73564796	1.00[ASN][1000 genomes]
rs73564799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959342	0.94[ASN][1000 genomes]
rs959343	0.94[ASN][1000 genomes]
rs978777	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787791	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs989088	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93710800-93718600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93710800-93719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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