Variant report

Variant	rs569401683
Chromosome Location	chr3:163021410-163021411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:163021378-163021428	GM19239	blood:	n/a
2	chr3:163021378-163021428	AoSMC	blood vessel:	n/a
3	chr3:163021378-163021428	H1-hESC	embryonic stem cell:	embryo
4	chr3:163021378-163021428	HRE	kidney:	n/a
5	chr3:163021378-163021428	U87	brain:	n/a
6	chr3:163021378-163021428	SAEC	small airway:	n/a
7	chr3:163021378-163021428	HNPCEpiC	eye:	n/a
8	chr3:163021378-163021428	A549	lung:	n/a
9	chr3:163021378-163021428	RPTEC	kidney:	n/a
10	chr3:163021378-163021428	NHDF-neo	bronchial:	n/a
11	chr3:163021378-163021428	T-47D	breast:	n/a
12	chr3:163021378-163021428	MCF10A-Er-Src	breast:	n/a
13	chr3:163021378-163021428	ovcar-3	ovarian:	n/a
14	chr3:163021378-163021428	Caco-2	colon:	n/a
15	chr3:163021378-163021428	PANC-1	pancreas:	n/a
16	chr3:163021378-163021428	MCF-7	breast:	n/a
17	chr3:163021378-163021428	GM12892	blood:	n/a
18	chr3:163021378-163021428	SK-N-SH	brain:	n/a
19	chr3:163021378-163021428	HIPEpiC	eye:	n/a
20	chr3:163021378-163021428	AG04450	lung:	fetal
21	chr3:163021378-163021428	BE2_C	brain:	n/a
22	chr3:163021378-163021428	HMEC	breast:	n/a
23	chr3:163021378-163021428	HepG2	liver:	n/a
24	chr3:163021378-163021428	AG09309	skin:	n/a
25	chr3:163021378-163021428	HCF	heart:	n/a
26	chr3:163021378-163021428	HCM	heart:	n/a
27	chr3:163021378-163021428	IMR90	lung:	fetal
28	chr3:163021378-163021428	Hela-S3	cervix:	n/a
29	chr3:163021378-163021428	HRCEpiC	kidney:	n/a
30	chr3:163021378-163021428	NT2-D1	testis:	n/a
31	chr3:163021378-163021428	BJ	skin:	n/a
32	chr3:163021378-163021428	ProgFib	skin:	n/a
33	chr3:163021378-163021428	SK-N-MC	brain:	n/a
34	chr3:163021378-163021428	HEEpiC	esophagus:	n/a
35	chr3:163021378-163021428	HL-60	blood:	n/a
36	chr3:163021378-163021428	AG04449	skin:	fetal
37	chr3:163021378-163021428	GM06990	blood:	n/a
38	chr3:163021378-163021428	AG10803	skin:	n/a
39	chr3:163021378-163021428	Hepatocyte	liver:	n/a
40	chr3:163021378-163021428	CMK	blood:	n/a
41	chr3:163021378-163021428	GM12891	blood:	n/a
42	chr3:163021378-163021428	LNCaP	prostate:	n/a
43	chr3:163021378-163021428	HUVEC	blood vessel:	n/a
44	chr3:163021378-163021428	HPAEpiC	pulmonary alveolar:	n/a
45	chr3:163021378-163021428	NH-A	brain:	n/a
46	chr3:163021378-163021428	Jurkat	blood:	n/a
47	chr3:163021378-163021428	PrEC	prostate:	n/a
48	chr3:163021378-163021428	SK-N-SH_RA	brain:	n/a
49	chr3:163021378-163021428	AG09319	gingival:	n/a
50	chr3:163021378-163021428	HRPEpiC	eye:	n/a

No data

Variant related genes	Relation type
CT64	CpG island

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1006015	chr3:162626560-163159978	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877791	chr3:162682825-163267267	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1012835	chr3:162695903-163091909	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877799	chr3:162862113-163142162	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv428747	chr3:162883968-163033938	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1006269	chr3:162930989-163324002	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2762359	chr3:162961220-163350596	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1004953	chr3:162967323-163580953	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv536787	chr3:162967323-163580953	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv592413	chr3:162975100-163267267	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv524743	chr3:162975100-163585969	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv877802	chr3:162976133-163200865	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv994977	chr3:162983135-163551976	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv877803	chr3:162990483-163106936	Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv997424	chr3:162990852-163166926	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv592414	chr3:162991366-163122012	Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3395155	chr3:163013299-163085519	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1833194	chr3:163021072-163282204	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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