Variant report

Variant	rs56946009
Chromosome Location	chr8:63713550-63713551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1351347	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1351351	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1471511	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1471512	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1585871	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16918940	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16929506	0.88[AMR][1000 genomes]
rs16929512	0.88[AMR][1000 genomes]
rs16929515	0.88[AMR][1000 genomes]
rs16929516	0.88[AMR][1000 genomes]
rs16929517	0.88[AMR][1000 genomes]
rs16929568	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16929587	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2170112	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2352717	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3943271	0.88[AMR][1000 genomes]
rs4339640	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4610739	0.83[ASN][1000 genomes]
rs4739002	0.88[AMR][1000 genomes]
rs4739003	0.86[AMR][1000 genomes]
rs4739004	0.85[AMR][1000 genomes]
rs4739008	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57259426	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62509400	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62509401	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62512374	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62512420	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62512421	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6996757	0.88[AMR][1000 genomes]
rs7003189	0.88[AMR][1000 genomes]
rs7005977	0.88[AMR][1000 genomes]
rs7836787	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7836794	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv521804	chr8:63705238-63758070	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv890961	chr8:63708519-63773787	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3342180	chr8:63709447-63734873	Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3341182	chr8:63712447-63734873	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63713000-63713600	Active TSS	HUES6 Cell Line	embryonic stem cell

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