Variant report

Variant	rs56948265
Chromosome Location	chr6:150773585-150773586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079757	1.00[AMR][1000 genomes]
rs17079779	1.00[AMR][1000 genomes]
rs58223803	1.00[AMR][1000 genomes]
rs59573747	1.00[AMR][1000 genomes]
rs59762732	1.00[AMR][1000 genomes]
rs73619627	1.00[AMR][1000 genomes]
rs73619628	1.00[AMR][1000 genomes]
rs73619632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886773	chr6:150751951-150799803	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150770800-150773800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:150772400-150774600	Enhancers	Fetal Heart	heart
3	chr6:150772800-150774600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150772800-150774800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:150772800-150774800	Enhancers	Fetal Muscle Leg	muscle
6	chr6:150772800-150775800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:150773000-150774000	Enhancers	Right Atrium	heart
8	chr6:150773000-150774200	Enhancers	Lung	lung
9	chr6:150773000-150774800	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:150773200-150773800	Enhancers	Fetal Stomach	stomach
11	chr6:150773200-150773800	Enhancers	Left Ventricle	heart
12	chr6:150773200-150775000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:150773200-150775000	Enhancers	Fetal Kidney	kidney
14	chr6:150773200-150775400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:150773400-150773600	Enhancers	Colon Smooth Muscle	Colon
16	chr6:150773400-150774400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:150773400-150774600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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