Variant report

Variant	rs56955124
Chromosome Location	chr11:76570974-76570975
allele	-/TTTA/TTTATTTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr11:76570739-76571494	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
2	chr11:76569198..76571423-chr11:76574828..76576546,2	K562	blood:
3	chr11:76570713..76572261-chr3:63997664..63999905,2	MCF-7	breast:
4	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:
5	chr11:76496902..76499372-chr11:76570017..76571527,2	K562	blood:
6	chr11:76493101..76495858-chr11:76570734..76573156,2	MCF-7	breast:
7	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

No data

Variant related genes	Relation type
ACER3	TF binding region
ENSG00000254632	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000163636	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10082568	0.89[ASN][1000 genomes]
rs1025815	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10431154	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10431181	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10431182	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10751262	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751264	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751267	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10751268	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10793201	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793204	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10793205	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793206	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793207	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10793209	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10793211	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10793212	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10793213	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10793214	0.90[ASN][1000 genomes]
rs10793215	0.90[ASN][1000 genomes]
rs10793216	0.85[ASN][1000 genomes]
rs10793217	0.90[ASN][1000 genomes]
rs10793218	0.89[ASN][1000 genomes]
rs10793219	0.89[ASN][1000 genomes]
rs10793220	0.89[ASN][1000 genomes]
rs10793221	0.89[ASN][1000 genomes]
rs10899292	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899294	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899295	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899297	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899298	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899301	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899302	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899305	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899307	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899308	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899310	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899311	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899312	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899313	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899315	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899316	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899320	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10899321	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899325	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10899327	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10899328	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10899329	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10899330	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10899332	0.90[ASN][1000 genomes]
rs11236977	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236999	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237023	0.85[ASN][1000 genomes]
rs11237025	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11237027	0.90[ASN][1000 genomes]
rs11237029	0.82[ASN][1000 genomes]
rs11237031	0.90[ASN][1000 genomes]
rs11237035	0.90[ASN][1000 genomes]
rs11533271	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11535857	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11537264	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12222825	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12292156	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12718490	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788158	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12794575	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796913	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12807735	0.89[ASN][1000 genomes]
rs1356455	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356456	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1372046	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474087	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517905	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517906	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1607285	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1816748	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1907295	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1914600	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1965151	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1980204	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980205	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1986000	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043986	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119456	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119457	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165404	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2203755	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372386	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2372388	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4367972	0.82[ASN][1000 genomes]
rs4379869	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457775	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471450	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4479014	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488228	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488229	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4556574	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4586198	0.85[ASN][1000 genomes]
rs4604914	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944128	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944129	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945115	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945116	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945118	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945119	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945124	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4945125	0.90[ASN][1000 genomes]
rs55956901	0.87[ASN][1000 genomes]
rs603610	0.86[AMR][1000 genomes]
rs6592671	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592672	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592675	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592676	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592677	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592679	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592680	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592682	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592684	0.90[ASN][1000 genomes]
rs6592685	0.84[ASN][1000 genomes]
rs6592687	0.90[ASN][1000 genomes]
rs7102485	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103308	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7105895	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106611	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106625	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110849	0.90[ASN][1000 genomes]
rs7113282	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113290	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114827	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115092	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116513	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116800	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116872	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117545	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117682	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118762	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119361	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120215	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122736	0.89[ASN][1000 genomes]
rs7126666	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128770	0.89[ASN][1000 genomes]
rs7129147	0.89[ASN][1000 genomes]
rs7924605	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924888	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927658	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929837	0.90[ASN][1000 genomes]
rs7930307	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931561	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932288	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933248	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7933351	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937883	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942574	0.89[ASN][1000 genomes]
rs7942646	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947809	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7949041	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951501	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326485	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs938809	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs938810	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963704	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963705	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964521	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9666315	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666322	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795229	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9795281	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795388	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9795398	0.84[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
3	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:76566000-76571000	Weak transcription	K562	blood
7	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:76566200-76571000	Weak transcription	NHEK	skin
9	chr11:76566600-76571200	Weak transcription	Thymus	Thymus
10	chr11:76566600-76571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:76567200-76572000	Weak transcription	Lung	lung
12	chr11:76567400-76571200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:76567600-76571200	Weak transcription	HMEC	breast
14	chr11:76567800-76571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:76567800-76571400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:76568000-76571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:76568600-76571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:76569000-76571400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76569000-76571400	Enhancers	Primary B cells from cord blood	blood
20	chr11:76569400-76571200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:76569800-76571400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:76569800-76571400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:76570000-76571000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:76570000-76571200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:76570000-76571200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:76570000-76571200	Weak transcription	Placenta	Placenta
27	chr11:76570000-76571200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:76570000-76571400	Weak transcription	GM12878-XiMat	blood
29	chr11:76570600-76571200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:76570600-76571200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr11:76570600-76571400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:76570600-76571400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:76570600-76571400	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:76570600-76571400	Enhancers	HepG2	liver
35	chr11:76570600-76571600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr11:76570800-76571200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr11:76570800-76571600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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