Variant report

Variant	rs569570604
Chromosome Location	chr15:76763088-76763089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr15:76762912-76763454	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr15:76762914-76763533	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr15:76763045-76763521	SK-N-SH	brain:	n/a	chr15:76763242-76763250
4	GATA3	chr15:76762856-76763551	SK-N-SH	brain:	n/a	chr15:76763242-76763250

Variant related genes	Relation type
ENSG00000261232	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
4	chr15:76750400-76763800	Weak transcription	Placenta	Placenta
5	chr15:76753800-76764400	Weak transcription	Fetal Intestine Large	intestine
6	chr15:76754000-76764400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76754200-76763600	Weak transcription	Pancreas	Pancrea
8	chr15:76754400-76763600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:76754800-76764400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:76755600-76764600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:76757800-76765200	Weak transcription	Aorta	Aorta
12	chr15:76758400-76765600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:76758800-76764400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:76758800-76765000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:76758800-76765200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:76759200-76763800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:76759200-76764400	Weak transcription	Psoas Muscle	Psoas
18	chr15:76759400-76763600	Strong transcription	Liver	Liver
19	chr15:76759400-76764400	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:76759800-76763400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:76759800-76770400	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:76760000-76772600	Weak transcription	GM12878-XiMat	blood
23	chr15:76760400-76773800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:76760600-76764200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:76760800-76763400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:76760800-76763400	Weak transcription	Brain Angular Gyrus	brain
27	chr15:76760800-76764200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:76761000-76763200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:76761000-76763400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:76761000-76763600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr15:76761200-76763400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr15:76761200-76764800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:76761400-76763600	Weak transcription	Brain Anterior Caudate	brain
34	chr15:76761400-76765400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:76761600-76763200	Strong transcription	Adipose Nuclei	Adipose
36	chr15:76761800-76763400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:76761800-76764200	Strong transcription	Primary T cells from cord blood	blood
38	chr15:76762000-76771400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:76762400-76763800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:76762400-76764000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:76762400-76765200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr15:76762600-76763400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:76762600-76763800	Enhancers	HSMM	muscle
44	chr15:76762600-76764200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:76762800-76764400	Weak transcription	Dnd41	blood
46	chr15:76762800-76764600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr15:76762800-76765400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr15:76762800-76765600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:76762800-76771200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:76763000-76764600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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