Variant report

Variant	rs56962759
Chromosome Location	chr10:119132670-119132671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119130955..119133218-chr10:119134123..119136577,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

rs_ID	r²[population]
rs3026068	0.83[AFR][1000 genomes]
rs363286	0.83[AFR][1000 genomes]
rs363290	0.83[AFR][1000 genomes]
rs363292	0.83[AFR][1000 genomes]
rs363297	0.83[AFR][1000 genomes]
rs55698419	1.00[AFR][1000 genomes]
rs56311829	0.91[AFR][1000 genomes]
rs56382679	0.91[AFR][1000 genomes]
rs57112183	1.00[AFR][1000 genomes]
rs58653554	1.00[AFR][1000 genomes]
rs59381469	1.00[AFR][1000 genomes]
rs59858809	1.00[AFR][1000 genomes]
rs59968623	1.00[AFR][1000 genomes]
rs61515506	1.00[AFR][1000 genomes]
rs74159162	0.83[AFR][1000 genomes]
rs74159163	0.83[AFR][1000 genomes]
rs74159181	1.00[AFR][1000 genomes]
rs74159182	1.00[AFR][1000 genomes]
rs74159183	1.00[AFR][1000 genomes]
rs74159193	1.00[AFR][1000 genomes]
rs74159195	1.00[AFR][1000 genomes]
rs74159196	1.00[AFR][1000 genomes]
rs74159198	1.00[AFR][1000 genomes]
rs74159199	1.00[AFR][1000 genomes]
rs74162306	0.91[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119112600-119132800	Weak transcription	Gastric	stomach
2	chr10:119126800-119132800	Weak transcription	Lung	lung
3	chr10:119127400-119132800	Weak transcription	Fetal Thymus	thymus
4	chr10:119128600-119133000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:119128800-119133200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:119128800-119133200	Weak transcription	Placenta	Placenta
7	chr10:119129000-119132800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:119129200-119133200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:119129600-119133400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:119130000-119132800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:119130200-119132800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:119130200-119132800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:119130200-119135600	Active TSS	Fetal Intestine Large	intestine
14	chr10:119130400-119132800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:119130400-119132800	Enhancers	Fetal Lung	lung
16	chr10:119130600-119133400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:119131000-119133200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:119131200-119132800	Weak transcription	Esophagus	oesophagus
19	chr10:119131200-119133400	Active TSS	Colonic Mucosa	Colon
20	chr10:119131200-119133400	Weak transcription	Spleen	Spleen
21	chr10:119131200-119135600	Active TSS	K562	blood
22	chr10:119131400-119132800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr10:119131400-119132800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:119131400-119133000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:119131400-119133000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:119131400-119133200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr10:119131400-119135400	Active TSS	Pancreas	Pancrea
28	chr10:119131400-119135800	Active TSS	Fetal Intestine Small	intestine
29	chr10:119131400-119135800	Active TSS	NHLF	lung
30	chr10:119131600-119132800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:119131600-119132800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:119131600-119132800	Weak transcription	Left Ventricle	heart
33	chr10:119131600-119133000	Flanking Active TSS	HUVEC	blood vessel
34	chr10:119131600-119133000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr10:119131600-119133200	Enhancers	Brain Substantia Nigra	brain
36	chr10:119131600-119133800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:119131600-119135400	Active TSS	Liver	Liver
38	chr10:119131600-119135400	Active TSS	HMEC	breast
39	chr10:119131600-119135600	Active TSS	GM12878-XiMat	blood
40	chr10:119131600-119135800	Active TSS	Ovary	ovary
41	chr10:119131600-119135800	Active TSS	Right Atrium	heart
42	chr10:119131800-119132800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
43	chr10:119131800-119132800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:119131800-119132800	Flanking Active TSS	NHEK	skin
45	chr10:119131800-119133000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr10:119131800-119133000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:119131800-119133000	Flanking Active TSS	Dnd41	blood
48	chr10:119131800-119133200	Active TSS	Stomach Smooth Muscle	stomach
49	chr10:119131800-119133400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr10:119131800-119133600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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