Variant report

Variant	rs56967953
Chromosome Location	chr11:71016501-71016502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70963635..70965716-chr11:71014557..71017556,4	MCF-7	breast:
2	chr11:71014521..71016757-chr11:71017985..71019593,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55743867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805348	0.89[AFR][1000 genomes]
rs55863521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55929954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100131	0.92[AFR][1000 genomes]
rs56705610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56966971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57009928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57063205	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58360857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854299	0.87[AFR][1000 genomes]
rs59055707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59147071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59439599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59444222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793283	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60092825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60462266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60504655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60599873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532375	0.90[AFR][1000 genomes]
rs73532387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532391	0.80[AFR][1000 genomes]
rs73532392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532402	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534114	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534131	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534133	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
2	chr11:71013400-71034400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:71013800-71016800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:71013800-71017000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:71013800-71018200	Weak transcription	Fetal Lung	lung
6	chr11:71014000-71020200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:71014200-71017200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:71015400-71016800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:71016200-71017800	Enhancers	Placenta	Placenta
10	chr11:71016400-71017000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:71016400-71017200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links