Variant report

Variant	rs56988571
Chromosome Location	chr5:124791902-124791903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124783033..124786221-chr5:124790428..124792959,3	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1554281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55717300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56707415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56821497	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835569	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57118683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57123863	1.00[AMR][1000 genomes]
rs57697012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58308815	1.00[AMR][1000 genomes]
rs58338793	1.00[AMR][1000 genomes]
rs58631543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917396	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59000628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59380738	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59958060	1.00[EUR][1000 genomes]
rs60202964	1.00[EUR][1000 genomes]
rs60214755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61304237	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61472360	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6595615	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870489	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878929	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6884059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6884354	1.00[AMR][1000 genomes]
rs6890153	1.00[AMR][1000 genomes]
rs6894842	1.00[AMR][1000 genomes]
rs73303332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73303334	1.00[AMR][1000 genomes]
rs73303374	1.00[AMR][1000 genomes]
rs73303384	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73303399	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73303400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305308	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73305365	1.00[EUR][1000 genomes]
rs73305368	1.00[EUR][1000 genomes]
rs73305401	1.00[EUR][1000 genomes]
rs73307316	1.00[EUR][1000 genomes]
rs73312635	1.00[EUR][1000 genomes]
rs7702589	1.00[AMR][1000 genomes]
rs7711951	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7725952	1.00[AMR][1000 genomes]
rs7729702	1.00[AMR][1000 genomes]
rs7729817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7730376	1.00[AMR][1000 genomes]
rs7730445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7732317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124787600-124797400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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