Variant report

Variant	rs570105029
Chromosome Location	chr15:77151193-77151194
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77151146..77154145-chr15:77195611..77198369,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:77120400-77158400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:77123200-77153200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:77131200-77155600	Weak transcription	Left Ventricle	heart
7	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:77139800-77155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:77139800-77158400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:77140000-77153600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:77141400-77171600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:77141800-77168000	Weak transcription	Spleen	Spleen
14	chr15:77142000-77158000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:77142000-77167200	Weak transcription	Esophagus	oesophagus
16	chr15:77142000-77167800	Weak transcription	Pancreas	Pancrea
17	chr15:77142000-77175800	Weak transcription	Fetal Brain Male	brain
18	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
19	chr15:77142200-77167600	Weak transcription	Lung	lung
20	chr15:77142800-77166400	Weak transcription	Thymus	Thymus
21	chr15:77144800-77179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:77145000-77158000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:77145200-77158200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:77145200-77158400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:77146000-77153800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr15:77146000-77155600	Weak transcription	Psoas Muscle	Psoas
27	chr15:77146200-77156000	Weak transcription	Ovary	ovary
28	chr15:77146200-77158000	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:77146200-77175400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:77146400-77153200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:77146400-77153200	Weak transcription	GM12878-XiMat	blood
32	chr15:77146400-77153400	Weak transcription	Fetal Thymus	thymus
33	chr15:77146400-77153600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:77146400-77158000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:77146400-77158200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:77146400-77158400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:77146400-77168000	Weak transcription	Primary T cells from cord blood	blood
38	chr15:77146400-77168200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:77146400-77196400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:77146600-77152800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:77146600-77154200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr15:77146600-77166000	Weak transcription	Fetal Intestine Small	intestine
43	chr15:77146600-77167800	Weak transcription	Aorta	Aorta
44	chr15:77146800-77167600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:77147200-77166200	Weak transcription	Fetal Stomach	stomach
46	chr15:77147800-77173800	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr15:77147800-77177200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:77148000-77167400	Weak transcription	Liver	Liver
49	chr15:77148200-77156000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:77148200-77169200	Weak transcription	Primary B cells from cord blood	blood

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