Variant report

Variant	rs570348836
Chromosome Location	chr10:52500386-52500387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52382538..52386733-chr10:52497918..52501112,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1825222	chr10:52477544-52527856	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948008	chr10:52500270-52536321	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52498800-52500600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:52498800-52500600	Active TSS	HSMM	muscle
3	chr10:52498800-52500800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:52499000-52500400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:52499000-52500400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:52499000-52500400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:52499000-52500400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr10:52499000-52500400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:52499000-52500400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:52499000-52500400	Active TSS	Brain Cingulate Gyrus	brain
11	chr10:52499000-52500400	Active TSS	Brain Germinal Matrix	brain
12	chr10:52499000-52500400	Active TSS	Colonic Mucosa	Colon
13	chr10:52499000-52500400	Active TSS	Fetal Intestine Large	intestine
14	chr10:52499000-52500400	Active TSS	Ovary	ovary
15	chr10:52499000-52500400	Active TSS	Thymus	Thymus
16	chr10:52499000-52500400	Active TSS	HSMMtube	muscle
17	chr10:52499000-52500600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr10:52499000-52500600	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr10:52499000-52500600	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr10:52499000-52500600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:52499000-52500600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:52499000-52500600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:52499000-52500600	Active TSS	Primary B cells from cord blood	blood
24	chr10:52499000-52500600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:52499000-52500600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:52499000-52500600	Active TSS	Brain Angular Gyrus	brain
27	chr10:52499000-52500600	Active TSS	Brain Anterior Caudate	brain
28	chr10:52499000-52500600	Active TSS	Brain Hippocampus Middle	brain
29	chr10:52499000-52500600	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr10:52499000-52500600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:52499000-52500600	Active TSS	Fetal Kidney	kidney
32	chr10:52499000-52500600	Active TSS	Psoas Muscle	Psoas
33	chr10:52499000-52500600	Active TSS	Rectal Smooth Muscle	rectum
34	chr10:52499000-52500600	Active TSS	Right Ventricle	heart
35	chr10:52499000-52500600	Active TSS	A549	lung
36	chr10:52499000-52500600	Active TSS	GM12878-XiMat	blood
37	chr10:52499000-52500600	Active TSS	NHDF-Ad	bronchial
38	chr10:52499000-52500600	Active TSS	NHLF	lung
39	chr10:52499000-52500800	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr10:52499000-52500800	Active TSS	H1 Cell Line	embryonic stem cell
41	chr10:52499000-52500800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:52499000-52500800	Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr10:52499000-52500800	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr10:52499000-52500800	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:52499000-52500800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:52499000-52500800	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr10:52499200-52500400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr10:52499200-52500400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:52499200-52500400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:52499200-52500400	Active TSS	Aorta	Aorta

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