Variant report

Variant	rs57045219
Chromosome Location	chr1:211209354-211209355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119668	0.86[ASN][1000 genomes]
rs11806852	0.83[ASN][1000 genomes]
rs12025525	0.83[ASN][1000 genomes]
rs12026311	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12026374	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12027535	0.82[ASN][1000 genomes]
rs12030715	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12407609	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4570464	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4575146	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57179129	0.83[ASN][1000 genomes]
rs58255417	0.87[ASN][1000 genomes]
rs61848562	0.83[ASN][1000 genomes]
rs61848568	0.85[ASN][1000 genomes]
rs61850228	0.82[ASN][1000 genomes]
rs6540648	0.87[ASN][1000 genomes]
rs6666342	0.87[ASN][1000 genomes]
rs6688920	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7514606	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211208200-211209800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:211209000-211211200	Enhancers	HSMMtube	muscle
5	chr1:211209200-211210000	Genic enhancers	HSMM	muscle
6	chr1:211209200-211211000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:211209200-211211000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:211209200-211211200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:211209200-211211200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:211209200-211211200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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