Variant report
| Variant | rs57057259 |
|---|---|
| Chromosome Location | chr1:195688850-195688851 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:195681664..195684653-chr1:195687722..195689895,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12061613 | 1.00[EUR][1000 genomes] |
| rs16838961 | 1.00[EUR][1000 genomes] |
| rs56742030 | 1.00[EUR][1000 genomes] |
| rs58467507 | 1.00[EUR][1000 genomes] |
| rs59718710 | 1.00[EUR][1000 genomes] |
| rs6658165 | 1.00[EUR][1000 genomes] |
| rs6676482 | 1.00[EUR][1000 genomes] |
| rs6690674 | 1.00[EUR][1000 genomes] |
| rs73056343 | 1.00[EUR][1000 genomes] |
| rs73056346 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73056348 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73056357 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73056369 | 0.95[AFR][1000 genomes] |
| rs73056370 | 0.95[AFR][1000 genomes] |
| rs73060547 | 1.00[EUR][1000 genomes] |
| rs73060549 | 1.00[EUR][1000 genomes] |
| rs73060550 | 1.00[EUR][1000 genomes] |
| rs73060553 | 1.00[EUR][1000 genomes] |
| rs73060560 | 1.00[EUR][1000 genomes] |
| rs73060569 | 1.00[EUR][1000 genomes] |
| rs73060572 | 1.00[EUR][1000 genomes] |
| rs73065150 | 1.00[EUR][1000 genomes] |
| rs73068324 | 1.00[EUR][1000 genomes] |
| rs73071004 | 1.00[EUR][1000 genomes] |
| rs73071007 | 1.00[EUR][1000 genomes] |
| rs73071048 | 1.00[EUR][1000 genomes] |
| rs73071050 | 1.00[EUR][1000 genomes] |
| rs73071052 | 1.00[EUR][1000 genomes] |
| rs73071054 | 1.00[EUR][1000 genomes] |
| rs73071058 | 1.00[EUR][1000 genomes] |
| rs74135147 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872894 | chr1:195053221-195745968 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009307 | chr1:195368381-195726703 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv872932 | chr1:195447286-195736070 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv872937 | chr1:195493538-195849028 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv947460 | chr1:195646625-195689578 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1007203 | chr1:195672857-195902360 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:195686800-195689600 | Weak transcription | NHDF-Ad | bronchial |
| 2 | chr1:195687600-195689000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 3 | chr1:195688400-195689200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 4 | chr1:195688800-195689200 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
