Variant report

Variant	rs570635196
Chromosome Location	chr2:183961126-183961127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003519	chr2:183885544-184015868	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv3430320	chr2:183960901-183961346	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183944600-183963200	Weak transcription	Brain Angular Gyrus	brain
2	chr2:183944800-183962200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:183944800-183962800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:183945000-183961800	Weak transcription	Left Ventricle	heart
5	chr2:183945000-183962600	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:183945000-183963400	Weak transcription	Fetal Intestine Small	intestine
7	chr2:183945000-183963400	Weak transcription	Fetal Stomach	stomach
8	chr2:183945600-183964000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:183945800-183972600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:183947000-183962800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:183947000-183963600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:183953200-183963600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:183954600-183988400	Weak transcription	Aorta	Aorta
14	chr2:183956000-183963600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:183956400-183963200	Weak transcription	Ovary	ovary
16	chr2:183958000-183963600	Weak transcription	Adipose Nuclei	Adipose
17	chr2:183959400-183970200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:183959800-183962800	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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