Variant report
| Variant | rs57071761 |
|---|---|
| Chromosome Location | chr8:42665757-42665758 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:42663874..42666100-chr8:42750337..42751923,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000120925 | Chromatin interaction |
| ENSG00000266044 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11992987 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11993799 | 1.00[AMR][1000 genomes] |
| rs11994115 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11995172 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28718980 | 1.00[AMR][1000 genomes] |
| rs28840077 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35327613 | 1.00[AMR][1000 genomes] |
| rs35506493 | 1.00[AMR][1000 genomes] |
| rs59592639 | 1.00[AMR][1000 genomes] |
| rs60133450 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61224035 | 1.00[AMR][1000 genomes] |
| rs6985448 | 1.00[AMR][1000 genomes] |
| rs6989452 | 1.00[AMR][1000 genomes] |
| rs73627250 | 1.00[AMR][1000 genomes] |
| rs73629108 | 1.00[AMR][1000 genomes] |
| rs73633750 | 1.00[AMR][1000 genomes] |
| rs73633762 | 1.00[AMR][1000 genomes] |
| rs73633763 | 1.00[AMR][1000 genomes] |
| rs73634623 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73634627 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73634652 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73635357 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530880 | chr8:41895241-42755506 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034724 | chr8:42386707-42772203 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv428516 | chr8:42577171-42731235 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv890846 | chr8:42625663-43240123 | Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 86 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
