Variant report

Variant	rs57072856
Chromosome Location	chr15:52922853-52922854
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52922172..52924304-chr15:52938305..52941001,3	MCF-7	breast:
2	chr15:52920111..52923064-chr15:52929395..52931419,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12101294	1.00[EUR][1000 genomes]
rs28403097	1.00[EUR][1000 genomes]
rs28515720	1.00[EUR][1000 genomes]
rs28624935	1.00[EUR][1000 genomes]
rs56346629	1.00[EUR][1000 genomes]
rs56710422	1.00[EUR][1000 genomes]
rs57094771	1.00[EUR][1000 genomes]
rs57960122	1.00[EUR][1000 genomes]
rs60407782	1.00[EUR][1000 genomes]
rs60882420	1.00[EUR][1000 genomes]
rs61364465	1.00[EUR][1000 genomes]
rs7173312	1.00[EUR][1000 genomes]
rs7176412	1.00[EUR][1000 genomes]
rs74014803	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74014805	1.00[EUR][1000 genomes]
rs74016851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv457140	chr15:52901433-52968746	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52861200-52925200	Weak transcription	Stomach Mucosa	stomach
2	chr15:52861800-52934800	Weak transcription	Right Ventricle	heart
3	chr15:52869400-52945400	Weak transcription	Small Intestine	intestine
4	chr15:52871800-52967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:52872200-52933800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:52873400-52928000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:52874800-52944200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:52882400-52926000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr15:52885600-52945200	Weak transcription	Spleen	Spleen
10	chr15:52891400-52927600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:52899600-52944400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:52900600-52944000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr15:52900800-52945200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:52902200-52943800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:52902400-52925200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:52902400-52934800	Weak transcription	NH-A	brain
17	chr15:52902600-52927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:52902600-52942000	Weak transcription	HUVEC	blood vessel
19	chr15:52903400-52925400	Weak transcription	Brain Germinal Matrix	brain
20	chr15:52903400-52933800	Weak transcription	Fetal Heart	heart
21	chr15:52903400-52943800	Weak transcription	Hela-S3	cervix
22	chr15:52903400-52944000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:52903600-52942400	Weak transcription	Dnd41	blood
24	chr15:52903600-52945400	Weak transcription	Colonic Mucosa	Colon
25	chr15:52904000-52934400	Weak transcription	Fetal Brain Male	brain
26	chr15:52904000-52943400	Weak transcription	Fetal Kidney	kidney
27	chr15:52904000-52945400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:52904000-52956800	Weak transcription	Esophagus	oesophagus
29	chr15:52904800-52928400	Weak transcription	Osteobl	bone
30	chr15:52906200-52934200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:52906200-52944000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:52908600-52956200	Weak transcription	Gastric	stomach
33	chr15:52909000-52925400	Weak transcription	Brain Angular Gyrus	brain
34	chr15:52909000-52942400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:52909600-52944000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:52909600-52950800	Weak transcription	Pancreas	Pancrea
37	chr15:52910400-52928600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:52912200-52924200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr15:52912200-52933200	Weak transcription	HSMM	muscle
40	chr15:52913400-52928800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:52914400-52925600	Weak transcription	Fetal Intestine Small	intestine
42	chr15:52914400-52927600	Weak transcription	Lung	lung
43	chr15:52915000-52926200	Weak transcription	Fetal Stomach	stomach
44	chr15:52915000-52927600	Weak transcription	Aorta	Aorta
45	chr15:52915600-52944200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:52915800-52925600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:52915800-52938400	Weak transcription	Ovary	ovary
48	chr15:52916200-52926200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:52916200-52934800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:52916200-52942800	Weak transcription	Fetal Brain Female	brain

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