Variant report

Variant	rs570938656
Chromosome Location	chr1:215256831-215256832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:215256611-215257351	IMR90	lung:	n/a	n/a
2	E2F6	chr1:215256539-215257213	H1-hESC	embryonic stem cell:	n/a	chr1:215256543-215256552
3	REST	chr1:215256802-215257355	MCF-7	breast:	n/a	chr1:215256946-215256959 chr1:215257126-215257146 chr1:215257132-215257146
4	E2F6	chr1:215256486-215257252	H1-hESC	embryonic stem cell:	n/a	chr1:215256543-215256552
5	MAX	chr1:215256546-215257256	H1-hESC	embryonic stem cell:	n/a	n/a
6	GATA3	chr1:215256463-215257448	T-47D	breast:	n/a	chr1:215256927-215256935
7	MAX	chr1:215256615-215257323	SK-N-SH	brain:	n/a	n/a
8	ZNF263	chr1:215256639-215257312	HEK293-T-REx	kidney:	n/a	n/a
9	SIN3AK20	chr1:215255694-215257396	MCF-7	breast:	n/a	n/a
10	MAX	chr1:215256566-215257248	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr1:215256411-215256872	H1-neurons	neurons:	n/a	n/a
12	MAX	chr1:215256445-215257398	SK-N-SH	brain:	n/a	chr1:215256538-215256548 chr1:215256544-215256554
13	MAZ	chr1:215255617-215257431	IMR90	lung:	n/a	chr1:215256538-215256548 chr1:215256544-215256554
14	CEBPB	chr1:215256809-215257090	IMR90	lung:	n/a	n/a
15	GATA3	chr1:215256749-215257422	T-47D	breast:	n/a	chr1:215256927-215256935
16	REST	chr1:215256774-215257292	PFSK-1	brain:	n/a	chr1:215256946-215256959 chr1:215257126-215257146 chr1:215257132-215257146
17	MXI1	chr1:215255517-215257345	IMR90	lung:	n/a	n/a
18	SIN3AK20	chr1:215256799-215257317	SK-N-SH	brain:	n/a	n/a
19	REST	chr1:215255587-215257488	H1-neurons	neurons:	n/a	chr1:215256946-215256959 chr1:215257126-215257146 chr1:215257132-215257146
20	POLR2A	chr1:215256561-215257335	ProgFib	skin:	n/a	n/a
21	REST	chr1:215256786-215257319	SK-N-SH	brain:	n/a	chr1:215256946-215256959 chr1:215257126-215257146 chr1:215257132-215257146
22	MAX	chr1:215256665-215257137	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
KCNK2	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3353761	chr1:215255604-215257627	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215254800-215257400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:215254800-215257400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr1:215254800-215259000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:215254800-215260000	Active TSS	Fetal Brain Female	brain
5	chr1:215255000-215257000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
6	chr1:215255000-215257200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr1:215255000-215257200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:215255000-215257400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:215255000-215257400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr1:215255000-215258400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:215255200-215257000	Active TSS	Muscle Satellite Cultured Cells	--
12	chr1:215255200-215257000	Enhancers	Spleen	Spleen
13	chr1:215255200-215257200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:215255200-215257200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr1:215255200-215258600	Active TSS	Fetal Brain Male	brain
16	chr1:215255200-215259000	Active TSS	NHDF-Ad	bronchial
17	chr1:215255400-215257000	Active TSS	Gastric	stomach
18	chr1:215255400-215257200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:215255400-215257200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
20	chr1:215255400-215257800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
21	chr1:215255600-215257000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:215255600-215257000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
23	chr1:215255600-215257200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:215255600-215257200	Bivalent/Poised TSS	Colonic Mucosa	Colon
25	chr1:215255600-215257200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr1:215255600-215257200	Bivalent Enhancer	Placenta	Placenta
27	chr1:215255600-215257200	Bivalent/Poised TSS	Psoas Muscle	Psoas
28	chr1:215255600-215257200	Bivalent/Poised TSS	A549	lung
29	chr1:215255600-215258400	Active TSS	Osteobl	bone
30	chr1:215255800-215257000	Active TSS	Brain Angular Gyrus	brain
31	chr1:215255800-215257000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr1:215255800-215257200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr1:215255800-215257200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:215255800-215257200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
35	chr1:215255800-215257200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
36	chr1:215255800-215257200	Bivalent/Poised TSS	HepG2	liver
37	chr1:215255800-215257400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:215255800-215257400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
39	chr1:215255800-215258800	Active TSS	NHLF	lung
40	chr1:215256000-215257000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:215256000-215257000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr1:215256000-215257000	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
43	chr1:215256000-215257000	Active TSS	NH-A	brain
44	chr1:215256000-215257200	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
45	chr1:215256000-215257200	Active TSS	Fetal Kidney	kidney
46	chr1:215256000-215257200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
47	chr1:215256000-215257400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
48	chr1:215256000-215257400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
49	chr1:215256000-215257400	Active TSS	HSMMtube	muscle
50	chr1:215256200-215257000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links