Variant report

Variant	rs571106
Chromosome Location	chr1:197256688-197256689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10754219	0.85[AMR][1000 genomes]
rs1764629	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1764796	0.81[EUR][1000 genomes]
rs1764800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2786114	0.91[EUR][1000 genomes]
rs4244141	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs476390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs510135	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs518149	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs552708	0.89[AMR][1000 genomes]
rs568757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs615647	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs616675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6428390	0.83[EUR][1000 genomes]
rs6678066	0.94[EUR][1000 genomes]
rs668590	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7513826	0.85[AMR][1000 genomes]
rs7523013	0.81[AMR][1000 genomes]
rs7554995	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197251000-197257000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:197253600-197257000	Weak transcription	Pancreas	Pancrea
3	chr1:197254400-197257000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:197254600-197257400	Enhancers	Fetal Thymus	thymus
5	chr1:197256600-197256800	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr1:197256600-197257400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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