Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52852996..52855697-chr10:52862209..52864368,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2339678	0.80[EUR][1000 genomes]
rs4935221	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52843600-52856200	Weak transcription	Aorta	Aorta
2	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
3	chr10:52849600-52853800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr10:52850200-52863400	Weak transcription	NHLF	lung
5	chr10:52852200-52853800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:52852200-52855600	Weak transcription	Fetal Heart	heart
7	chr10:52852400-52856800	Weak transcription	Ovary	ovary
8	chr10:52853000-52853600	Weak transcription	Left Ventricle	heart
9	chr10:52853000-52853800	Weak transcription	Psoas Muscle	Psoas
10	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:52853200-52854200	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:52853200-52855400	Weak transcription	Brain Substantia Nigra	brain
13	chr10:52853200-52856000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:52853200-52856000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:52853200-52856000	Weak transcription	Right Atrium	heart
16	chr10:52853200-52857600	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:52853200-52860000	Weak transcription	Fetal Lung	lung
18	chr10:52853400-52856200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:52853400-52857200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:52853400-52857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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