Variant report

Variant	rs571249071
Chromosome Location	chr12:40299900-40299901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv558594	chr12:40299849-40303631	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40297000-40300200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr12:40297200-40300600	Enhancers	Fetal Brain Male	brain
3	chr12:40298400-40300000	Enhancers	Colon Smooth Muscle	Colon
4	chr12:40298400-40314200	Weak transcription	Fetal Kidney	kidney
5	chr12:40298600-40300200	Enhancers	Fetal Brain Female	brain
6	chr12:40298800-40311200	Weak transcription	Pancreas	Pancrea
7	chr12:40299200-40300000	Enhancers	Brain Hippocampus Middle	brain
8	chr12:40299200-40304400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:40299200-40305600	Weak transcription	Esophagus	oesophagus
10	chr12:40299200-40306400	Weak transcription	Left Ventricle	heart
11	chr12:40299600-40306200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:40299600-40309200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:40299800-40300000	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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