Variant report

Variant	rs57131555
Chromosome Location	chr3:23345862-23345863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10510536	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11926494	0.89[ASN][1000 genomes]
rs11927173	0.88[ASN][1000 genomes]
rs13094957	0.82[ASN][1000 genomes]
rs1495130	0.89[ASN][1000 genomes]
rs1496653	0.82[ASN][1000 genomes]
rs17012800	0.89[ASN][1000 genomes]
rs17012829	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1845899	0.82[ASN][1000 genomes]
rs1908475	0.91[ASN][1000 genomes]
rs2017065	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2173058	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2359765	0.81[ASN][1000 genomes]
rs2359766	0.81[ASN][1000 genomes]
rs35352848	0.82[ASN][1000 genomes]
rs35901544	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4327332	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56979234	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57625069	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58724157	0.87[ASN][1000 genomes]
rs59687869	0.82[ASN][1000 genomes]
rs60782093	0.88[ASN][1000 genomes]
rs61578857	0.88[ASN][1000 genomes]
rs6765801	0.88[ASN][1000 genomes]
rs6769167	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792370	0.90[ASN][1000 genomes]
rs6808488	0.85[ASN][1000 genomes]
rs73823472	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7612463	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7612812	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7613185	0.82[ASN][1000 genomes]
rs7627380	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627525	0.82[ASN][1000 genomes]
rs7628372	0.82[ASN][1000 genomes]
rs9866739	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9867046	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv967177	chr3:23337450-23350050	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:23343000-23347200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:23343200-23350200	Weak transcription	Psoas Muscle	Psoas
4	chr3:23343400-23346600	Weak transcription	Ovary	ovary
5	chr3:23343600-23347800	Enhancers	HSMMtube	muscle
6	chr3:23343800-23355200	Weak transcription	Aorta	Aorta
7	chr3:23344400-23346800	Enhancers	Fetal Lung	lung
8	chr3:23344600-23346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:23344600-23346400	Weak transcription	Adipose Nuclei	Adipose
10	chr3:23344600-23353400	Weak transcription	Left Ventricle	heart
11	chr3:23344600-23356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:23345000-23350200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:23345200-23346800	Enhancers	HSMM	muscle
14	chr3:23345200-23348000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:23345400-23346800	Enhancers	NHLF	lung
16	chr3:23345400-23347000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:23345600-23346400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:23345600-23346800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:23345600-23347200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:23345600-23354000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:23345800-23346600	Weak transcription	Fetal Kidney	kidney
22	chr3:23345800-23346600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:23345800-23346800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:23345800-23356400	Weak transcription	NHDF-Ad	bronchial
25	chr3:23345800-23358600	Weak transcription	Fetal Stomach	stomach

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