Variant report

Variant	rs571360436
Chromosome Location	chr4:56914393-56914394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3378090	chr4:56914220-56916768	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56908400-56914600	Weak transcription	GM12878-XiMat	blood
2	chr4:56909600-56914600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:56914000-56914400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr4:56914000-56914400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:56914000-56914400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:56914000-56914400	Enhancers	Fetal Brain Male	brain
7	chr4:56914000-56914400	Enhancers	Fetal Brain Female	brain
8	chr4:56914000-56914800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:56914000-56916800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr4:56914000-56917000	Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr4:56914000-56917200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:56914200-56914400	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr4:56914200-56914400	Enhancers	Primary hematopoietic stem cells	blood
14	chr4:56914200-56914400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:56914200-56914600	Enhancers	Brain Germinal Matrix	brain
16	chr4:56914200-56917000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:56914200-56917200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:56914200-56917400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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