Variant report

Variant	rs57136451
Chromosome Location	chr1:94383935-94383936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10874804	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874805	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165027	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165028	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165029	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165032	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805379	1.00[ASN][1000 genomes]
rs11808380	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12059028	1.00[ASN][1000 genomes]
rs12062272	1.00[ASN][1000 genomes]
rs12062925	1.00[ASN][1000 genomes]
rs12069476	1.00[ASN][1000 genomes]
rs12076074	1.00[ASN][1000 genomes]
rs12078134	1.00[ASN][1000 genomes]
rs12080386	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081399	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090038	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090230	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12094966	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110374	1.00[ASN][1000 genomes]
rs17110608	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110611	0.93[EUR][1000 genomes]
rs2234729	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075342	1.00[ASN][1000 genomes]
rs41292667	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292669	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292671	1.00[ASN][1000 genomes]
rs41292673	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542218	1.00[ASN][1000 genomes]
rs58790885	1.00[ASN][1000 genomes]
rs59444123	1.00[ASN][1000 genomes]
rs59545065	1.00[ASN][1000 genomes]
rs61750895	1.00[ASN][1000 genomes]
rs6541397	1.00[ASN][1000 genomes]
rs6680755	1.00[ASN][1000 genomes]
rs6686765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701957	1.00[ASN][1000 genomes]
rs6702045	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702064	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704348	1.00[ASN][1000 genomes]
rs72965451	1.00[ASN][1000 genomes]
rs72967332	1.00[ASN][1000 genomes]
rs72967387	1.00[ASN][1000 genomes]
rs72969374	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514067	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515991	1.00[ASN][1000 genomes]
rs7525516	1.00[ASN][1000 genomes]
rs7552401	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523355	chr1:94351328-94385591	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94383800-94384000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links