Variant report

Variant	rs57149866
Chromosome Location	chr2:133425346-133425347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:133424851..133426510-chr2:133433798..133435548,2	MCF-7	breast:
2	chr2:133425043..133426903-chr2:133429908..133431486,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10496690	1.00[AMR][1000 genomes]
rs56677346	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56924796	1.00[AMR][1000 genomes]
rs58236296	1.00[AMR][1000 genomes]
rs59679606	1.00[AMR][1000 genomes]
rs60214246	1.00[AMR][1000 genomes]
rs60981588	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011421	chr2:132895241-133682185	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv875137	chr2:133167263-133714142	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv583158	chr2:133316092-133862100	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv875138	chr2:133410921-133761794	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133404000-133426000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:133410000-133426200	Weak transcription	Osteobl	bone
3	chr2:133414200-133426000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:133417600-133425600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:133418600-133425600	Weak transcription	Brain Anterior Caudate	brain
6	chr2:133422400-133425800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:133424000-133425400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:133424000-133425800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:133424600-133425400	Transcr. at gene 5' and 3'	NH-A	brain
10	chr2:133424600-133427000	Flanking Active TSS	HUVEC	blood vessel
11	chr2:133424800-133425400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr2:133424800-133425600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:133424800-133425800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:133424800-133426000	Bivalent Enhancer	Fetal Stomach	stomach
15	chr2:133425000-133425600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:133425000-133425800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:133425200-133425400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:133425200-133425600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:133425200-133425600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:133425200-133425600	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
21	chr2:133425200-133425800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
22	chr2:133425200-133425800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:133425200-133425800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:133425200-133426000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
25	chr2:133425200-133426200	Enhancers	Lung	lung
26	chr2:133425200-133426600	Bivalent Enhancer	Fetal Heart	heart

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