Variant report

Variant	rs57153309
Chromosome Location	chr14:70114659-70114660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70113887..70117052-chr14:70117331..70121263,5	K562	blood:
2	chr14:70108653..70111894-chr14:70113537..70117255,5	K562	blood:
3	chr14:70049658..70051914-chr14:70113200..70114742,2	K562	blood:
4	chr14:70107632..70111411-chr14:70113640..70118051,5	MCF-7	breast:
5	chr14:70114480..70116769-chr14:70178429..70180282,2	MCF-7	breast:
6	chr14:70049075..70051914-chr14:70112777..70114742,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17107167	0.85[AFR][1000 genomes]
rs58658815	0.85[AFR][1000 genomes]
rs74060254	0.85[AFR][1000 genomes]
rs74060255	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	esv3414868	chr14:70114309-70114743	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70104800-70125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:70105200-70115400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:70105600-70115600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:70105800-70115600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:70106600-70115000	Weak transcription	Fetal Kidney	kidney
6	chr14:70108400-70121200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:70109000-70121400	Enhancers	Stomach Mucosa	stomach
8	chr14:70109400-70115400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:70109400-70121200	Enhancers	Small Intestine	intestine
10	chr14:70109600-70121200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:70109800-70115200	Weak transcription	Fetal Thymus	thymus
12	chr14:70109800-70125400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:70110000-70115200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:70110000-70122800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:70110200-70121400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr14:70110400-70114800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:70110400-70115200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:70110400-70115200	Weak transcription	Thymus	Thymus
19	chr14:70110400-70115400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:70110400-70116000	Weak transcription	Esophagus	oesophagus
21	chr14:70110400-70121400	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:70110400-70124600	Weak transcription	Fetal Brain Female	brain
23	chr14:70110600-70115000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:70110600-70115000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:70110600-70115400	Weak transcription	Aorta	Aorta
26	chr14:70110800-70115000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr14:70111200-70115000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:70112000-70115200	Weak transcription	NHEK	skin
29	chr14:70112200-70115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:70112200-70115000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:70112200-70115200	Weak transcription	HMEC	breast
32	chr14:70112400-70114800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:70112400-70115000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr14:70112400-70117000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr14:70112600-70123600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr14:70112800-70115200	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:70113000-70115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:70113600-70115000	Enhancers	Liver	Liver
39	chr14:70113600-70115200	Enhancers	Colon Smooth Muscle	Colon
40	chr14:70113600-70120600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr14:70113600-70121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:70113800-70115000	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr14:70113800-70115000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr14:70113800-70115000	Enhancers	A549	lung
45	chr14:70113800-70115200	Enhancers	NH-A	brain
46	chr14:70113800-70115400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:70113800-70115400	Enhancers	Duodenum Mucosa	Duodenum
48	chr14:70113800-70115400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr14:70113800-70115600	Enhancers	Brain Hippocampus Middle	brain
50	chr14:70113800-70116000	Enhancers	Hela-S3	cervix

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