Variant report
| Variant | rs571651 |
|---|---|
| Chromosome Location | chr11:57148053-57148054 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000149136 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10736684 | 1.00[ASN][1000 genomes] |
| rs10736685 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1257719 | 1.00[ASN][1000 genomes] |
| rs1257721 | 1.00[ASN][1000 genomes] |
| rs1348304 | 1.00[ASN][1000 genomes] |
| rs2508768 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs2584860 | 1.00[ASN][1000 genomes] |
| rs2846392 | 1.00[ASN][1000 genomes] |
| rs2846393 | 1.00[ASN][1000 genomes] |
| rs2846394 | 1.00[ASN][1000 genomes] |
| rs2846395 | 1.00[ASN][1000 genomes] |
| rs514861 | 1.00[ASN][1000 genomes] |
| rs521889 | 1.00[ASN][1000 genomes] |
| rs536352 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs536455 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs540687 | 1.00[ASN][1000 genomes] |
| rs544079 | 1.00[ASN][1000 genomes] |
| rs567118 | 1.00[ASN][1000 genomes] |
| rs630396 | 1.00[ASN][1000 genomes] |
| rs667864 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs669661 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044030 | chr11:57073395-58035564 | Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
| 2 | nsv541047 | chr11:57073395-58035564 | Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
| 3 | nsv530621 | chr11:57139699-57703639 | Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:57144800-57154800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr11:57148000-57148600 | Enhancers | A549 | lung |
