Variant report
| Variant | rs57170073 |
|---|---|
| Chromosome Location | chr8:110444253-110444254 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16879336 | 1.00[AMR][1000 genomes] |
| rs16879428 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16879553 | 1.00[AMR][1000 genomes] |
| rs16879567 | 1.00[AMR][1000 genomes] |
| rs16879636 | 1.00[AMR][1000 genomes] |
| rs1892762 | 1.00[AMR][1000 genomes] |
| rs1979299 | 1.00[AMR][1000 genomes] |
| rs1979300 | 1.00[AMR][1000 genomes] |
| rs2124980 | 1.00[AMR][1000 genomes] |
| rs55752435 | 1.00[AMR][1000 genomes] |
| rs56238419 | 1.00[AMR][1000 genomes] |
| rs56932873 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57937650 | 1.00[AMR][1000 genomes] |
| rs59326650 | 1.00[AMR][1000 genomes] |
| rs59478583 | 1.00[AMR][1000 genomes] |
| rs59982879 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60463599 | 1.00[AMR][1000 genomes] |
| rs73700649 | 1.00[AMR][1000 genomes] |
| rs73700650 | 1.00[AMR][1000 genomes] |
| rs73700652 | 1.00[AMR][1000 genomes] |
| rs73700655 | 1.00[AMR][1000 genomes] |
| rs73700858 | 1.00[AMR][1000 genomes] |
| rs73700860 | 1.00[AMR][1000 genomes] |
| rs73700867 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700869 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700876 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700886 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73704006 | 1.00[AMR][1000 genomes] |
| rs73704009 | 1.00[AMR][1000 genomes] |
| rs73704016 | 1.00[AMR][1000 genomes] |
| rs73704022 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891273 | chr8:110219735-110475874 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv891279 | chr8:110268104-110450092 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv891280 | chr8:110346363-110465481 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv1018510 | chr8:110403496-110504029 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110442400-110445600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
