Variant report

Variant	rs57179129
Chromosome Location	chr1:211194404-211194405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11119654	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119668	0.94[ASN][1000 genomes]
rs11806852	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12022715	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12022739	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12025525	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026311	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026374	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027535	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12030715	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036999	0.84[ASN][1000 genomes]
rs12039302	0.89[ASN][1000 genomes]
rs12043937	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12043952	0.87[ASN][1000 genomes]
rs12046391	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12070402	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12406562	0.89[ASN][1000 genomes]
rs12407609	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501544	0.90[ASN][1000 genomes]
rs1501545	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1501548	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1501549	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1501550	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1532682	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358210	0.80[ASN][1000 genomes]
rs4570464	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575146	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56999636	0.90[ASN][1000 genomes]
rs57045219	0.83[ASN][1000 genomes]
rs57655345	0.83[ASN][1000 genomes]
rs58255417	0.94[ASN][1000 genomes]
rs61848562	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61848568	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61848992	0.80[ASN][1000 genomes]
rs61849000	0.85[ASN][1000 genomes]
rs61849015	0.89[ASN][1000 genomes]
rs61849024	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61850228	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6540636	0.85[ASN][1000 genomes]
rs6540638	0.89[ASN][1000 genomes]
rs6540648	0.94[ASN][1000 genomes]
rs6659135	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6666287	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6666342	0.94[ASN][1000 genomes]
rs6675213	0.84[ASN][1000 genomes]
rs6678568	0.82[ASN][1000 genomes]
rs6680997	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688920	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6689715	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7514606	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515316	0.84[ASN][1000 genomes]
rs7518841	0.89[ASN][1000 genomes]
rs7523929	0.88[ASN][1000 genomes]
rs7551412	0.87[ASN][1000 genomes]
rs7553997	0.89[ASN][1000 genomes]
rs7554723	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:211192400-211194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:211192400-211194800	Weak transcription	A549	lung
8	chr1:211192400-211198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:211192600-211198400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:211192600-211199800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
12	chr1:211194400-211209200	Weak transcription	HSMM	muscle

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