Variant report

Variant	rs571862305
Chromosome Location	chr9:72474606-72474607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72472600-72474800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:72472600-72476000	Weak transcription	NH-A	brain
5	chr9:72472800-72476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:72473000-72475000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:72473200-72475400	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr9:72473400-72475800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:72474000-72475600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:72474000-72476800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:72474400-72474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr9:72474400-72474800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:72474400-72474800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:72474400-72475000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr9:72474600-72474800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:72474600-72474800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr9:72474600-72475000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:72474600-72475200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr9:72474600-72475400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links