Variant report

Variant	rs57186357
Chromosome Location	chr1:215525435-215525436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13375155	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13376355	0.81[AFR][1000 genomes]
rs17024724	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17024732	0.82[AFR][1000 genomes]
rs1876408	0.85[AFR][1000 genomes]
rs28555458	1.00[AMR][1000 genomes]
rs58133122	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61057668	0.95[AFR][1000 genomes]
rs61652140	1.00[AMR][1000 genomes]
rs6686570	0.95[AFR][1000 genomes]
rs73090129	1.00[AMR][1000 genomes]
rs73090172	0.85[AFR][1000 genomes]
rs73090177	0.85[AFR][1000 genomes]
rs73090179	0.81[AFR][1000 genomes]
rs73091957	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091959	0.82[AFR][1000 genomes]
rs7546281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014878	chr1:215453286-215527616	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1003660	chr1:215453286-215529747	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215519400-215530600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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