Variant report
| Variant | rs57186366 |
|---|---|
| Chromosome Location | chr5:97706378-97706379 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:97701258..97703130-chr5:97705966..97708009,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1455421 | 1.00[AMR][1000 genomes] |
| rs2124262 | 1.00[AMR][1000 genomes] |
| rs57817463 | 1.00[AMR][1000 genomes] |
| rs6898848 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73143803 | 1.00[AMR][1000 genomes] |
| rs73143804 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73143839 | 1.00[AMR][1000 genomes] |
| rs73143842 | 1.00[AMR][1000 genomes] |
| rs73143845 | 1.00[AMR][1000 genomes] |
| rs73143847 | 1.00[AMR][1000 genomes] |
| rs73143853 | 1.00[AMR][1000 genomes] |
| rs73143856 | 1.00[AMR][1000 genomes] |
| rs73143857 | 1.00[AMR][1000 genomes] |
| rs73143859 | 1.00[AMR][1000 genomes] |
| rs73143862 | 1.00[AMR][1000 genomes] |
| rs73143866 | 1.00[AMR][1000 genomes] |
| rs73143879 | 1.00[AMR][1000 genomes] |
| rs73159206 | 1.00[AMR][1000 genomes] |
| rs73159235 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73159240 | 1.00[AMR][1000 genomes] |
| rs73159247 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73159254 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882407 | chr5:97553255-97783046 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv882408 | chr5:97616089-97836794 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv830419 | chr5:97653713-97829079 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv4928 | chr5:97689980-97734899 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:97705200-97707200 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
