Variant report

Variant	rs57192996
Chromosome Location	chr6:64024111-64024112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12111052	0.85[AFR][1000 genomes]
rs12111159	0.85[AFR][1000 genomes]
rs12111218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12111488	0.83[AFR][1000 genomes]
rs12111559	0.85[AFR][1000 genomes]
rs57018235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59514171	0.92[AFR][1000 genomes]
rs60018171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6454127	0.85[AFR][1000 genomes]
rs6926934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934571	0.83[AFR][1000 genomes]
rs6936427	0.84[AFR][1000 genomes]
rs7764987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7776434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64018200-64050800	Weak transcription	A549	lung
2	chr6:64024000-64024400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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