Variant report

Variant	rs57213893
Chromosome Location	chr6:81256705-81256706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81254930..81257563-chr6:81262833..81265650,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10452562	0.80[AMR][1000 genomes]
rs16891960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4562096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56046663	1.00[EUR][1000 genomes]
rs6902405	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6915165	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81251000-81258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:81251400-81259000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:81251800-81260600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:81252200-81257800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:81253000-81257400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:81253600-81257000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:81253600-81257800	Enhancers	NHDF-Ad	bronchial
8	chr6:81254000-81256800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:81254000-81256800	Weak transcription	HMEC	breast
10	chr6:81254000-81257400	Weak transcription	NHEK	skin
11	chr6:81254000-81257800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:81254000-81257800	Enhancers	Osteobl	bone
13	chr6:81254200-81257800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:81254400-81257600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:81254600-81256800	Weak transcription	HSMMtube	muscle
16	chr6:81254600-81256800	Weak transcription	NHLF	lung
17	chr6:81254600-81257000	Weak transcription	NH-A	brain
18	chr6:81254600-81257600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:81254600-81258000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:81254800-81256800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:81254800-81258000	Enhancers	HSMM	muscle
22	chr6:81255200-81256800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:81255200-81257800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:81255800-81257000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:81256600-81257800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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