Variant report

Variant	rs57214110
Chromosome Location	chr11:93668910-93668911
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93667365..93670015-chr11:93861067..93863754,2	MCF-7	breast:
2	chr11:93667177..93668967-chr11:93861410..93863273,2	K562	blood:

Variant related genes	Relation type
ENSG00000110218	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1032934	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1032935	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10501811	0.95[ASN][1000 genomes]
rs11020587	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1113700	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270580	1.00[EUR][1000 genomes]
rs1605292	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1605293	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2019595	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2460047	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590831	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57367718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59013509	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60539088	0.98[ASN][1000 genomes]
rs61463513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6483278	1.00[EUR][1000 genomes]
rs66480929	0.85[AMR][1000 genomes]
rs66650995	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs66918645	0.85[AMR][1000 genomes]
rs67689846	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67926172	0.98[ASN][1000 genomes]
rs68019383	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102891	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72962832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72962854	0.98[ASN][1000 genomes]
rs7932631	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs908754	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787791	0.85[AMR][1000 genomes]
rs978950	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs978952	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93656400-93669000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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