Variant report

Variant	rs572161737
Chromosome Location	chr10:53010405-53010406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:53009453-53010678	H1-neurons	neurons:	n/a	n/a
2	CEBPB	chr10:53010289-53010617	IMR90	lung:	n/a	chr10:53010468-53010479 chr10:53010467-53010478 chr10:53010467-53010480 chr10:53010467-53010480
3	CEBPB	chr10:53010310-53010619	Hela-S3	cervix:	n/a	chr10:53010468-53010479 chr10:53010467-53010478 chr10:53010467-53010480 chr10:53010467-53010480
4	CEBPB	chr10:53010343-53010615	HepG2	liver:	n/a	chr10:53010468-53010479 chr10:53010467-53010478 chr10:53010467-53010480 chr10:53010467-53010480
5	POLR2A	chr10:53009905-53010605	H1-neurons	neurons:	n/a	n/a
6	CEBPB	chr10:53010312-53010600	A549	lung:	n/a	chr10:53010468-53010479 chr10:53010467-53010478 chr10:53010467-53010480 chr10:53010467-53010480
7	REST	chr10:53009390-53010931	H1-neurons	neurons:	n/a	n/a
8	CEBPB	chr10:53010319-53010589	K562	blood:	n/a	chr10:53010468-53010479 chr10:53010467-53010478 chr10:53010467-53010480 chr10:53010467-53010480
9	POLR2A	chr10:53009990-53010454	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53008618..53010640-chr10:53013381..53015189,2	K562	blood:
2	chr10:53008618..53010801-chr10:53013381..53015189,3	K562	blood:

Variant related genes	Relation type
ENSG00000231132	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	esv2757383	chr10:52995974-53015583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	esv2759750	chr10:52995974-53015583	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv831874	chr10:53010357-53195508	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53004800-53010600	Weak transcription	Psoas Muscle	Psoas
2	chr10:53006200-53015800	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:53006800-53017000	Weak transcription	Aorta	Aorta
4	chr10:53006800-53017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:53007000-53010600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:53007400-53016600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:53007800-53012600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:53008000-53012400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:53008000-53012800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:53009400-53011800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:53009400-53012000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:53009400-53012000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:53009600-53011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:53009600-53013600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:53009800-53011000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr10:53009800-53011200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr10:53009800-53011400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:53009800-53011800	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:53010000-53010600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:53010000-53011200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:53010000-53011200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr10:53010000-53011800	Enhancers	HUVEC	blood vessel
23	chr10:53010200-53010600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:53010200-53010800	Enhancers	Fetal Muscle Leg	muscle
25	chr10:53010200-53011200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:53010400-53010800	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:53010400-53011000	Enhancers	HSMMtube	muscle
28	chr10:53010400-53011200	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:53010400-53011200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:53010400-53011200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:53010400-53012000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:53010400-53013600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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