Variant report

Variant	rs57217609
Chromosome Location	chr3:142624126-142624127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142547592..142548148-chr3:142624035..142624538,2	MCF-7	breast:
2	chr3:142562977..142563804-chr3:142623385..142624273,2	MCF-7	breast:
3	chr3:142547227..142548190-chr3:142623907..142624526,2	MCF-7	breast:
4	chr3:142305389..142306193-chr3:142623757..142624589,2	K562	blood:
5	chr3:142623378..142625294-chr3:142630641..142632428,2	MCF-7	breast:
6	chr3:142623173..142624153-chr3:142705646..142706555,2	K562	blood:
7	chr3:142547606..142548431-chr3:142623663..142624603,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16852815	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35783198	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55692570	0.97[EUR][1000 genomes]
rs55932307	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331970	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56389497	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57269734	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57755508	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59064122	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60123913	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60582377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73232757	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73232770	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234726	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234727	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234728	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234729	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234730	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234735	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234737	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234739	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234742	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234745	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234747	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234749	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234750	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73234753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73234765	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142618000-142628000	Weak transcription	Aorta	Aorta
2	chr3:142622600-142624600	Enhancers	Stomach Mucosa	stomach
3	chr3:142623000-142624200	Enhancers	Fetal Intestine Small	intestine
4	chr3:142623200-142624200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:142623200-142624200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:142623200-142624200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr3:142623200-142624200	Enhancers	HMEC	breast
8	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:142623200-142624600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:142623400-142624200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:142623400-142624200	Enhancers	Right Ventricle	heart
12	chr3:142623400-142624200	Enhancers	K562	blood
13	chr3:142623400-142624400	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:142623400-142624400	Enhancers	GM12878-XiMat	blood
15	chr3:142623400-142624600	Enhancers	NHDF-Ad	bronchial
16	chr3:142623400-142624800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:142623400-142624800	Enhancers	A549	lung
18	chr3:142623400-142630200	Weak transcription	Left Ventricle	heart
19	chr3:142623800-142624200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:142623800-142624400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:142623800-142624600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:142623800-142626600	Weak transcription	Fetal Heart	heart
23	chr3:142623800-142628400	Weak transcription	NH-A	brain
24	chr3:142624000-142624200	Enhancers	Osteobl	bone
25	chr3:142624000-142627200	Weak transcription	Placenta	Placenta
26	chr3:142624000-142628200	Weak transcription	Right Atrium	heart
27	chr3:142624000-142631200	Weak transcription	Muscle Satellite Cultured Cells	--

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