Variant report

Variant	rs572312634
Chromosome Location	chr1:94287889-94287890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94273349..94275410-chr1:94286366..94287981,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546822	chr1:94246577-94289863	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1815663	chr1:94246577-94291252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1877	chr1:94247756-94292908	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv508415	chr1:94256122-94305339	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1802380	chr1:94272119-94291252	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1822452	chr1:94278128-94320233	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	121 gene(s)	inside rSNPs	diseases
7	esv1003322	chr1:94285785-94294520	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3319346	chr1:94286364-94293162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3513622	chr1:94287264-94292362	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3319347	chr1:94287389-94292237	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3513620	chr1:94287664-94292262	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3319348	chr1:94287864-94291762	Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94279600-94302800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:94280000-94290000	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94281200-94289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:94283000-94288400	Weak transcription	NHDF-Ad	bronchial
5	chr1:94283400-94290000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:94283400-94310000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:94283600-94288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:94283600-94293400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:94284000-94294600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:94284200-94292200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:94284200-94306200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr1:94284200-94311200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:94284400-94289600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:94284400-94296000	Weak transcription	Fetal Intestine Small	intestine
15	chr1:94285000-94288400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:94285400-94288000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:94285600-94288800	Enhancers	Placenta	Placenta
18	chr1:94286400-94294800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:94286600-94295600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr1:94286800-94288600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:94287000-94288800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:94287000-94289400	Enhancers	HMEC	breast
23	chr1:94287000-94292400	Weak transcription	HUVEC	blood vessel
24	chr1:94287200-94288200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:94287200-94289000	Enhancers	NHEK	skin
26	chr1:94287400-94288200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:94287400-94288600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:94287400-94289000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:94287400-94293600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:94287600-94291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:94287600-94292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:94287600-94292800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:94287600-94292800	Weak transcription	A549	lung
34	chr1:94287600-94292800	Weak transcription	HSMM	muscle
35	chr1:94287600-94292800	Weak transcription	HSMMtube	muscle
36	chr1:94287600-94292800	Weak transcription	NH-A	brain
37	chr1:94287600-94293200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:94287600-94294000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:94287800-94288200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:94287800-94288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:94287800-94292800	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links