Variant report

Variant	rs57240303
Chromosome Location	chr18:29065804-29065805
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11081700	1.00[AMR][1000 genomes]
rs11541770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16961951	1.00[AMR][1000 genomes]
rs58206990	1.00[AMR][1000 genomes]
rs59351433	1.00[AMR][1000 genomes]
rs73410301	1.00[AMR][1000 genomes]
rs73412237	1.00[AMR][1000 genomes]
rs73414233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414237	1.00[AMR][1000 genomes]
rs73414241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29059000-29066600	Weak transcription	Esophagus	oesophagus
2	chr18:29062000-29066200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:29064400-29069000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr18:29065400-29071800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:29065600-29066000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:29065600-29066000	Enhancers	Ovary	ovary
7	chr18:29065600-29067200	Enhancers	NHEK	skin
8	chr18:29065600-29068000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:29065600-29068400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr18:29065600-29070200	Enhancers	HMEC	breast
11	chr18:29065800-29066400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:29065800-29066600	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links