Variant report

Variant	rs572413817
Chromosome Location	chr11:46963394-46963395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46960359..46964188-chr11:46967085..46970047,4	MCF-7	breast:
2	chr11:46958296..46961235-chr11:46961375..46963736,2	K562	blood:
3	chr11:46957787..46959806-chr11:46961787..46963719,2	MCF-7	breast:
4	chr11:46961899..46965031-chr11:46965080..46968958,4	K562	blood:
5	chr11:46957071..46960336-chr11:46960862..46965955,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975103	chr11:46962682-46965005	Weak transcription Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46958600-46973800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:46958800-46969400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46959000-46964600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:46959000-46964800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:46959000-46966200	Weak transcription	Placenta	Placenta
6	chr11:46959000-46966800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:46959000-46968000	Weak transcription	Spleen	Spleen
8	chr11:46959000-46968800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:46959000-46969000	Weak transcription	Brain Substantia Nigra	brain
10	chr11:46959000-46969200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:46959000-46969400	Weak transcription	Colonic Mucosa	Colon
12	chr11:46959000-46969400	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:46959000-46969400	Weak transcription	Pancreas	Pancrea
14	chr11:46959000-46969600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:46959000-46969600	Weak transcription	HSMMtube	muscle
16	chr11:46959000-46973400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:46959000-46973600	Weak transcription	HUVEC	blood vessel
18	chr11:46959000-46973800	Weak transcription	Primary T cells from cord blood	blood
19	chr11:46959000-46973800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:46959000-46973800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:46959000-46975600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:46959000-46977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:46959000-46980000	Weak transcription	Aorta	Aorta
24	chr11:46959000-46980000	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:46959000-46980000	Weak transcription	Ovary	ovary
26	chr11:46959000-46980200	Weak transcription	Primary B cells from cord blood	blood
27	chr11:46959000-46980200	Weak transcription	Gastric	stomach
28	chr11:46959000-46980200	Weak transcription	Lung	lung
29	chr11:46959000-46980200	Weak transcription	Thymus	Thymus
30	chr11:46959000-46981000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr11:46959000-46982200	Weak transcription	Fetal Kidney	kidney
32	chr11:46959000-46982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:46959000-46982600	Weak transcription	Fetal Thymus	thymus
34	chr11:46959000-46998600	Weak transcription	Left Ventricle	heart
35	chr11:46959200-46963400	Weak transcription	Fetal Intestine Small	intestine
36	chr11:46959200-46964600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:46959200-46965200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:46959200-46965800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:46959200-46966000	Weak transcription	HMEC	breast
40	chr11:46959200-46966000	Weak transcription	NHEK	skin
41	chr11:46959200-46966200	Strong transcription	Hela-S3	cervix
42	chr11:46959200-46968200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:46959200-46968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:46959200-46968400	Weak transcription	A549	lung
45	chr11:46959200-46968400	Weak transcription	NH-A	brain
46	chr11:46959200-46968600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr11:46959200-46968600	Weak transcription	HepG2	liver
48	chr11:46959200-46968600	Weak transcription	NHDF-Ad	bronchial
49	chr11:46959200-46968800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:46959200-46968800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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